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Items: 1 to 20 of 101

1.

CIBEX: center for information biology gene expression database.

Ikeo K, Ishi-i J, Tamura T, Gojobori T, Tateno Y.

C R Biol. 2003 Oct-Nov;326(10-11):1079-82.

PMID:
14744116
2.

ArrayExpress: a public database of gene expression data at EBI.

Rocca-Serra P, Brazma A, Parkinson H, Sarkans U, Shojatalab M, Contrino S, Vilo J, Abeygunawardena N, Mukherjee G, Holloway E, Kapushesky M, Kemmeren P, Lara GG, Oezcimen A, Sansone SA.

C R Biol. 2003 Oct-Nov;326(10-11):1075-8.

PMID:
14744115
3.

The MGED Ontology: a resource for semantics-based description of microarray experiments.

Whetzel PL, Parkinson H, Causton HC, Fan L, Fostel J, Fragoso G, Game L, Heiskanen M, Morrison N, Rocca-Serra P, Sansone SA, Taylor C, White J, Stoeckert CJ Jr.

Bioinformatics. 2006 Apr 1;22(7):866-73. Epub 2006 Jan 21.

PMID:
16428806
4.

NCBI GEO: mining millions of expression profiles--database and tools.

Barrett T, Suzek TO, Troup DB, Wilhite SE, Ngau WC, Ledoux P, Rudnev D, Lash AE, Fujibuchi W, Edgar R.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D562-6.

5.

MicroGen: a MIAME compliant web system for microarray experiment information and workflow management.

Burgarella S, Cattaneo D, Pinciroli F, Masseroli M.

BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S6.

6.

Construction of an open-access database that integrates cross-reference information from the transcriptome and proteome of immune cells.

Hijikata A, Kitamura H, Kimura Y, Yokoyama R, Aiba Y, Bao Y, Fujita S, Hase K, Hori S, Ishii Y, Kanagawa O, Kawamoto H, Kawano K, Koseki H, Kubo M, Kurita-Miki A, Kurosaki T, Masuda K, Nakata M, Oboki K, Ohno H, Okamoto M, Okayama Y, O-Wang J, Saito H, Saito T, Sakuma M, Sato K, Sato K, Seino K, Setoguchi R, Tamura Y, Tanaka M, Taniguchi M, Taniuchi I, Teng A, Watanabe T, Watarai H, Yamasaki S, Ohara O.

Bioinformatics. 2007 Nov 1;23(21):2934-41. Epub 2007 Sep 24.

PMID:
17893089
7.

ArrayExpress--a public repository for microarray gene expression data at the EBI.

Brazma A, Parkinson H, Sarkans U, Shojatalab M, Vilo J, Abeygunawardena N, Holloway E, Kapushesky M, Kemmeren P, Lara GG, Oezcimen A, Rocca-Serra P, Sansone SA.

Nucleic Acids Res. 2003 Jan 1;31(1):68-71.

8.

Gene Expression Browser: large-scale and cross-experiment microarray data integration, management, search & visualization.

Zhang M, Zhang Y, Liu L, Yu L, Tsang S, Tan J, Yao W, Kang MS, An Y, Fan X.

BMC Bioinformatics. 2010 Aug 20;11:433. doi: 10.1186/1471-2105-11-433.

9.

The Mouse SAGE Site: database of public mouse SAGE libraries.

Divina P, Forejt J.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D482-3.

10.

DDBJ in the stream of various biological data.

Miyazaki S, Sugawara H, Ikeo K, Gojobori T, Tateno Y.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D31-4.

11.

NASCArrays: a repository for microarray data generated by NASC's transcriptomics service.

Craigon DJ, James N, Okyere J, Higgins J, Jotham J, May S.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D575-7.

12.

A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB.

Rayner TF, Rocca-Serra P, Spellman PT, Causton HC, Farne A, Holloway E, Irizarry RA, Liu J, Maier DS, Miller M, Petersen K, Quackenbush J, Sherlock G, Stoeckert CJ Jr, White J, Whetzel PL, Wymore F, Parkinson H, Sarkans U, Ball CA, Brazma A.

BMC Bioinformatics. 2006 Nov 6;7:489.

13.

ArrayExpress--a public repository for microarray gene expression data at the EBI.

Parkinson H, Sarkans U, Shojatalab M, Abeygunawardena N, Contrino S, Coulson R, Farne A, Lara GG, Holloway E, Kapushesky M, Lilja P, Mukherjee G, Oezcimen A, Rayner T, Rocca-Serra P, Sharma A, Sansone S, Brazma A.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D553-5.

14.

Annotating nonspecific SAGE tags with microarray data.

Ge X, Jung YC, Wu Q, Kibbe WA, Wang SM.

Genomics. 2006 Jan;87(1):173-80. Epub 2005 Nov 28.

15.

[International public gene expression database (CIBEX) and data submission].

Tateno Y, Ikeo K.

Tanpakushitsu Kakusan Koso. 2004 Dec;49(17 Suppl):2678-83. Review. Japanese. No abstract available.

PMID:
15669238
16.

[Transcriptomes for serial analysis of gene expression].

Marti J, Piquemal D, Manchon L, Commes T.

J Soc Biol. 2002;196(4):303-7. Review. French.

PMID:
12645300
17.
18.

GPX-Macrophage Expression Atlas: a database for expression profiles of macrophages challenged with a variety of pro-inflammatory, anti-inflammatory, benign and pathogen insults.

Grimes GR, Moodie S, Beattie JS, Craigon M, Dickinson P, Forster T, Livingston AD, Mewissen M, Robertson KA, Ross AJ, Sing G, Ghazal P.

BMC Genomics. 2005 Dec 12;6:178.

19.

A comparative analysis of the information content in long and short SAGE libraries.

Li YJ, Xu P, Qin X, Schmechel DE, Hulette CM, Haines JL, Pericak-Vance MA, Gilbert JR.

BMC Bioinformatics. 2006 Nov 16;7:504.

20.

The Gene Expression Omnibus Database.

Clough E, Barrett T.

Methods Mol Biol. 2016;1418:93-110. doi: 10.1007/978-1-4939-3578-9_5.

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