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Items: 1 to 20 of 68


Identifying gene regulatory elements by genome-wide recovery of DNase hypersensitive sites.

Crawford GE, Holt IE, Mullikin JC, Tai D, Blakesley R, Bouffard G, Young A, Masiello C, Green ED, Wolfsberg TG, Collins FS; National Institutes Of Health Intramural Sequencing Center..

Proc Natl Acad Sci U S A. 2004 Jan 27;101(4):992-7.


Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS).

Crawford GE, Holt IE, Whittle J, Webb BD, Tai D, Davis S, Margulies EH, Chen Y, Bernat JA, Ginsburg D, Zhou D, Luo S, Vasicek TJ, Daly MJ, Wolfsberg TG, Collins FS.

Genome Res. 2006 Jan;16(1):123-31.


Genome-scale identification of Caenorhabditis elegans regulatory elements by tiling-array mapping of DNase I hypersensitive sites.

Shi B, Guo X, Wu T, Sheng S, Wang J, Skogerbø G, Zhu X, Chen R.

BMC Genomics. 2009 Feb 25;10:92. doi: 10.1186/1471-2164-10-92.


Mapping DNase-I hypersensitive sites on human isochores.

Di Filippo M, Bernardi G.

Gene. 2008 Aug 1;419(1-2):62-5. doi: 10.1016/j.gene.2008.02.012.


A whole genome analysis of 5' regulatory regions of human genes for putative cis-acting modulators of nucleosome positioning.

Ganapathi M, Singh GP, Sandhu KS, Brahmachari SK, Brahmachari V.

Gene. 2007 Apr 15;391(1-2):242-51.


Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays.

Sabo PJ, Kuehn MS, Thurman R, Johnson BE, Johnson EM, Cao H, Yu M, Rosenzweig E, Goldy J, Haydock A, Weaver M, Shafer A, Lee K, Neri F, Humbert R, Singer MA, Richmond TA, Dorschner MO, McArthur M, Hawrylycz M, Green RD, Navas PA, Noble WS, Stamatoyannopoulos JA.

Nat Methods. 2006 Jul;3(7):511-8.


Analyses of p53 target genes in the human genome by bioinformatic and microarray approaches.

Wang L, Wu Q, Qiu P, Mirza A, McGuirk M, Kirschmeier P, Greene JR, Wang Y, Pickett CB, Liu S.

J Biol Chem. 2001 Nov 23;276(47):43604-10.


A multistep bioinformatic approach detects putative regulatory elements in gene promoters.

Bortoluzzi S, Coppe A, Bisognin A, Pizzi C, Danieli GA.

BMC Bioinformatics. 2005 May 18;6:121.


The sheep genome contributes to localization of control elements in a human gene with complex regulatory mechanisms.

Mouchel N, Tebbutt SJ, Broackes-Carter FC, Sahota V, Summerfield T, Gregory DJ, Harris A.

Genomics. 2001 Aug;76(1-3):9-13.


Discovery of functional noncoding elements by digital analysis of chromatin structure.

Sabo PJ, Hawrylycz M, Wallace JC, Humbert R, Yu M, Shafer A, Kawamoto J, Hall R, Mack J, Dorschner MO, McArthur M, Stamatoyannopoulos JA.

Proc Natl Acad Sci U S A. 2004 Nov 30;101(48):16837-42.


Discovering sequences with potential regulatory characteristics.

Bina M, Wyss P, Lazarus SA, Shah SR, Ren W, Szpankowski W, Crawford GE, Park SP, Song XC.

Genomics. 2009 Apr;93(4):314-22. doi: 10.1016/j.ygeno.2008.11.008.


Identification of active transcriptional regulatory modules by the functional assay of DNA from nucleosome-free regions.

Yaragatti M, Basilico C, Dailey L.

Genome Res. 2008 Jun;18(6):930-8. doi: 10.1101/gr.073460.107.


Identifying promoter features of co-regulated genes with similar network motifs.

Harari O, del Val C, Romero-Zaliz R, Shin D, Huang H, Groisman EA, Zwir I.

BMC Bioinformatics. 2009 Apr 29;10 Suppl 4:S1. doi: 10.1186/1471-2105-10-S4-S1.


Comparative analysis of chromatin landscape in regulatory regions of human housekeeping and tissue specific genes.

Ganapathi M, Srivastava P, Das Sutar SK, Kumar K, Dasgupta D, Pal Singh G, Brahmachari V, Brahmachari SK.

BMC Bioinformatics. 2005 May 26;6:126.


Genome-wide identification of DNaseI hypersensitive sites using active chromatin sequence libraries.

Sabo PJ, Humbert R, Hawrylycz M, Wallace JC, Dorschner MO, McArthur M, Stamatoyannopoulos JA.

Proc Natl Acad Sci U S A. 2004 Mar 30;101(13):4537-42.


Genome-wide computational and expression analyses reveal G-quadruplex DNA motifs as conserved cis-regulatory elements in human and related species.

Verma A, Halder K, Halder R, Yadav VK, Rawal P, Thakur RK, Mohd F, Sharma A, Chowdhury S.

J Med Chem. 2008 Sep 25;51(18):5641-9. doi: 10.1021/jm800448a.


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