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Items: 1 to 20 of 362


SMART 4.0: towards genomic data integration.

Letunic I, Copley RR, Schmidt S, Ciccarelli FD, Doerks T, Schultz J, Ponting CP, Bork P.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D142-4.


SMART 6: recent updates and new developments.

Letunic I, Doerks T, Bork P.

Nucleic Acids Res. 2009 Jan;37(Database issue):D229-32. doi: 10.1093/nar/gkn808. Epub 2008 Oct 31.


SMART 5: domains in the context of genomes and networks.

Letunic I, Copley RR, Pils B, Pinkert S, Schultz J, Bork P.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D257-60.


Recent improvements to the SMART domain-based sequence annotation resource.

Letunic I, Goodstadt L, Dickens NJ, Doerks T, Schultz J, Mott R, Ciccarelli F, Copley RR, Ponting CP, Bork P.

Nucleic Acids Res. 2002 Jan 1;30(1):242-4.


3D-GENOMICS: a database to compare structural and functional annotations of proteins between sequenced genomes.

Fleming K, Müller A, MacCallum RM, Sternberg MJ.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D245-50.


PCHM: A bioinformatic resource for high-throughput human mitochondrial proteome searching and comparison.

Kim T, Kim E, Park SJ, Joo H.

Comput Biol Med. 2009 Aug;39(8):689-96. doi: 10.1016/j.compbiomed.2009.05.006. Epub 2009 Jun 21.


MitoRes: a resource of nuclear-encoded mitochondrial genes and their products in Metazoa.

Catalano D, Licciulli F, Turi A, Grillo G, Saccone C, D'Elia D.

BMC Bioinformatics. 2006 Jan 24;7:36.


The UCSC Genome Browser Database: update 2006.

Hinrichs AS, Karolchik D, Baertsch R, Barber GP, Bejerano G, Clawson H, Diekhans M, Furey TS, Harte RA, Hsu F, Hillman-Jackson J, Kuhn RM, Pedersen JS, Pohl A, Raney BJ, Rosenbloom KR, Siepel A, Smith KE, Sugnet CW, Sultan-Qurraie A, Thomas DJ, Trumbower H, Weber RJ, Weirauch M, Zweig AS, Haussler D, Kent WJ.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D590-8.


Columba: an integrated database of proteins, structures, and annotations.

Trissl S, Rother K, Müller H, Steinke T, Koch I, Preissner R, Frömmel C, Leser U.

BMC Bioinformatics. 2005 Mar 31;6:81.


Presentation of differentially regulated proteins within a web-accessible proteome database system of microorganisms.

Pleissner KP, Schmelzer P, Wehrl W, Jungblut PR.

Proteomics. 2004 Oct;4(10):2987-90.


The MicrobesOnline Web site for comparative genomics.

Alm EJ, Huang KH, Price MN, Koche RP, Keller K, Dubchak IL, Arkin AP.

Genome Res. 2005 Jul;15(7):1015-22.


The comprehensive microbial resource.

Davidsen T, Beck E, Ganapathy A, Montgomery R, Zafar N, Yang Q, Madupu R, Goetz P, Galinsky K, White O, Sutton G.

Nucleic Acids Res. 2010 Jan;38(Database issue):D340-5. doi: 10.1093/nar/gkp912. Epub 2009 Nov 5.


Integration of bioinformatics resources for functional analysis of gene expression and proteomic data.

Huang H, Hu ZZ, Arighi CN, Wu CH.

Front Biosci. 2007 Sep 1;12:5071-88. Review.


MBGD update 2010: toward a comprehensive resource for exploring microbial genome diversity.

Uchiyama I, Higuchi T, Kawai M.

Nucleic Acids Res. 2010 Jan;38(Database issue):D361-5. doi: 10.1093/nar/gkp948. Epub 2009 Nov 11.


Genome annotation of Anopheles gambiae using mass spectrometry-derived data.

Kalume DE, Peri S, Reddy R, Zhong J, Okulate M, Kumar N, Pandey A.

BMC Genomics. 2005 Sep 19;6:128.

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