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Items: 1 to 20 of 130

1.

PISCES: a protein sequence culling server.

Wang G, Dunbrack RL Jr.

Bioinformatics. 2003 Aug 12;19(12):1589-91.

PMID:
12912846
2.

PISCES: recent improvements to a PDB sequence culling server.

Wang G, Dunbrack RL Jr.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W94-8.

3.

ProtBuD: a database of biological unit structures of protein families and superfamilies.

Xu Q, Canutescu A, Obradovic Z, Dunbrack RL Jr.

Bioinformatics. 2006 Dec 1;22(23):2876-82. Epub 2006 Oct 2. Erratum in: Bioinformatics. 2007 Aug;23(15):2028.

PMID:
17018535
4.

PSST-2.0: Protein Data Bank Sequence Search Tool.

Ananthalakshmi P, Samayamohan K, Chokalingam C, Mayilarasi C, Sekar K.

Appl Bioinformatics. 2005;4(2):141-5.

PMID:
16128616
5.

MannDB - a microbial database of automated protein sequence analyses and evidence integration for protein characterization.

Zhou CL, Lam MW, Smith JR, Zemla AT, Dyer MD, Kuczmarski TA, Vitalis EA, Slezak TR.

BMC Bioinformatics. 2006 Oct 17;7:459.

6.

STORM towards protein function: systematic tailored ORF-data retrieval and management.

Lavigne R, Sun WD, Volckaert G.

Appl Bioinformatics. 2003;2(3):177-9.

PMID:
15130805
7.

STRUCLA: a WWW meta-server for protein structure comparison and evolutionary classification.

Sasin JM, Kurowski MA, Bujnicki JM.

Bioinformatics. 2003;19 Suppl 1:i252-4.

PMID:
12855467
8.

Soap-HT-BLAST: high throughput BLAST based on Web services.

Wang J, Mu Q.

Bioinformatics. 2003 Sep 22;19(14):1863-4.

PMID:
14512365
9.

The SSEA server for protein secondary structure alignment.

Fontana P, Bindewald E, Toppo S, Velasco R, Valle G, Tosatto SC.

Bioinformatics. 2005 Feb 1;21(3):393-5. Epub 2004 Sep 3.

PMID:
15347578
10.

The PDB-Preview database: a repository of in-silico models of 'on-hold' PDB entries.

Fischer D, Paś J, Rychlewski L.

Bioinformatics. 2004 Oct 12;20(15):2482-4. Epub 2004 Apr 8.

PMID:
15073011
11.

Parallel BLAST on split databases.

Mathog DR.

Bioinformatics. 2003 Sep 22;19(14):1865-6.

PMID:
14512366
12.

Fast and accurate database homology search using upper bounds of local alignment scores.

Itoh M, Goto S, Akutsu T, Kanehisa M.

Bioinformatics. 2005 Apr 1;21(7):912-21. Epub 2004 Oct 27.

PMID:
15509606
13.

Using Dali for structural comparison of proteins.

Holm L, Kääriäinen S, Wilton C, Plewczynski D.

Curr Protoc Bioinformatics. 2006 Jul;Chapter 5:Unit 5.5. doi: 10.1002/0471250953.bi0505s14.

PMID:
18428766
14.

Intersect: identification and visualization of overlaps in database search results.

Pegg SC, Novak WR, Babbitt PC.

Bioinformatics. 2003 Oct 12;19(15):1997-9.

PMID:
14555634
15.

CoC: a database of universally conserved residues in protein folds.

Donald JE, Hubner IA, Rotemberg VM, Shakhnovich EI, Mirny LA.

Bioinformatics. 2005 May 15;21(10):2539-40. Epub 2005 Mar 3.

PMID:
15746286
16.

PROMALS web server for accurate multiple protein sequence alignments.

Pei J, Kim BH, Tang M, Grishin NV.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W649-52. Epub 2007 Apr 22.

17.

PDB-UF: database of predicted enzymatic functions for unannotated protein structures from structural genomics.

von Grotthuss M, Plewczynski D, Ginalski K, Rychlewski L, Shakhnovich EI.

BMC Bioinformatics. 2006 Feb 6;7:53.

18.

BioParser: a tool for processing of sequence similarity analysis reports.

Catanho M, Mascarenhas D, Degrave W, de Miranda AB.

Appl Bioinformatics. 2006;5(1):49-53.

PMID:
16539538
19.

Blast sampling for structural and functional analyses.

Friedrich A, Ripp R, Garnier N, Bettler E, Deléage G, Poch O, Moulinier L.

BMC Bioinformatics. 2007 Feb 23;8:62.

20.

IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices.

Schäffer AA, Wolf YI, Ponting CP, Koonin EV, Aravind L, Altschul SF.

Bioinformatics. 1999 Dec;15(12):1000-11.

PMID:
10745990

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