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Items: 1 to 20 of 58

1.

Statistical significance for genomewide studies.

Storey JD, Tibshirani R.

Proc Natl Acad Sci U S A. 2003 Aug 5;100(16):9440-5. Epub 2003 Jul 25.

2.

The false discovery rate: a key concept in large-scale genetic studies.

Chen JJ, Roberson PK, Schell MJ.

Cancer Control. 2010 Jan;17(1):58-62.

4.

Rank order metrics for quantifying the association of sequence features with gene regulation.

Clarke ND, Granek JA.

Bioinformatics. 2003 Jan 22;19(2):212-8.

PMID:
12538241
5.

Empirical Bayes screening of many p-values with applications to microarray studies.

Datta S, Datta S.

Bioinformatics. 2005 May 1;21(9):1987-94. Epub 2005 Feb 2.

PMID:
15691856
6.

Poisson approximation for significance in genome-wide ChIP-chip tiling arrays.

Zhang Y.

Bioinformatics. 2008 Dec 15;24(24):2825-31. doi: 10.1093/bioinformatics/btn549. Epub 2008 Oct 25.

PMID:
18953047
7.

Determination of the differentially expressed genes in microarray experiments using local FDR.

Aubert J, Bar-Hen A, Daudin JJ, Robin S.

BMC Bioinformatics. 2004 Sep 6;5:125.

8.

Comparison of seven methods for producing Affymetrix expression scores based on False Discovery Rates in disease profiling data.

Shedden K, Chen W, Kuick R, Ghosh D, Macdonald J, Cho KR, Giordano TJ, Gruber SB, Fearon ER, Taylor JM, Hanash S.

BMC Bioinformatics. 2005 Feb 10;6:26.

9.

Improving false discovery rate estimation.

Pounds S, Cheng C.

Bioinformatics. 2004 Jul 22;20(11):1737-45. Epub 2004 Feb 26.

PMID:
14988112
11.

Identifying periodically expressed transcripts in microarray time series data.

Wichert S, Fokianos K, Strimmer K.

Bioinformatics. 2004 Jan 1;20(1):5-20.

PMID:
14693803
12.

Evaluating the results of genomewide linkage scans of complex traits by locus counting.

Wiltshire S, Cardon LR, McCarthy MI.

Am J Hum Genet. 2002 Nov;71(5):1175-82. Epub 2002 Sep 25.

13.

Multiple-testing strategy for analyzing cDNA array data on gene expression.

Delongchamp RR, Bowyer JF, Chen JJ, Kodell RL.

Biometrics. 2004 Sep;60(3):774-82.

PMID:
15339301
14.

On the assessment of statistical significance in disease-gene discovery.

Zhao LP, Prentice R, Shen F, Hsu L.

Am J Hum Genet. 1999 Jun;64(6):1739-53.

15.

Estimating the false discovery rate using nonparametric deconvolution.

van de Wiel MA, Kim KI.

Biometrics. 2007 Sep;63(3):806-15.

PMID:
17825012
16.

Bioinformatics analysis of alternative splicing.

Lee C, Wang Q.

Brief Bioinform. 2005 Mar;6(1):23-33. Review.

PMID:
15826354
17.

Methodological aspects of the genetic dissection of gene expression.

Carlborg O, De Koning DJ, Manly KF, Chesler E, Williams RW, Haley CS.

Bioinformatics. 2005 May 15;21(10):2383-93.

PMID:
15613385
18.

A classification-based machine learning approach for the analysis of genome-wide expression data.

Lyons-Weiler J, Patel S, Bhattacharya S.

Genome Res. 2003 Mar;13(3):503-12.

19.
20.

Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments.

Johnson JM, Edwards S, Shoemaker D, Schadt EE.

Trends Genet. 2005 Feb;21(2):93-102. Review.

PMID:
15661355

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