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Items: 1 to 20 of 107

1.

Generalized singular value decomposition for comparative analysis of genome-scale expression data sets of two different organisms.

Alter O, Brown PO, Botstein D.

Proc Natl Acad Sci U S A. 2003 Mar 18;100(6):3351-6. Epub 2003 Mar 11.

2.

Protein pathway and complex clustering of correlated mRNA and protein expression analyses in Saccharomyces cerevisiae.

Washburn MP, Koller A, Oshiro G, Ulaszek RR, Plouffe D, Deciu C, Winzeler E, Yates JR 3rd.

Proc Natl Acad Sci U S A. 2003 Mar 18;100(6):3107-12. Epub 2003 Mar 7.

4.

Comparative analysis of multiple genome-scale data sets.

Werner-Washburne M, Wylie B, Boyack K, Fuge E, Galbraith J, Weber J, Davidson G.

Genome Res. 2002 Oct;12(10):1564-73.

5.
6.

Genomic signal processing: from matrix algebra to genetic networks.

Alter O.

Methods Mol Biol. 2007;377:17-60. Review.

PMID:
17634608
7.

Inferring genetic networks from DNA microarray data by multiple regression analysis.

Kato M, Tsunoda T, Takagi T.

Genome Inform Ser Workshop Genome Inform. 2000;11:118-28.

PMID:
11700593
8.

Identification of transcription factor targets by phenotypic activation and microarray expression profiling in yeast.

Chua G.

Methods Mol Biol. 2009;548:19-35. doi: 10.1007/978-1-59745-540-4_2.

PMID:
19521817
9.

Possibilistic approach for biclustering microarray data.

Cano C, Adarve L, López J, Blanco A.

Comput Biol Med. 2007 Oct;37(10):1426-36. Epub 2007 Mar 8.

PMID:
17346690
10.

Functional redundancy in the yeast cell cycle: FUS3 and KSS1 have both overlapping and unique functions.

Elion EA, Brill JA, Fink GR.

Cold Spring Harb Symp Quant Biol. 1991;56:41-9. No abstract available.

PMID:
1819502
11.

A tensor higher-order singular value decomposition for integrative analysis of DNA microarray data from different studies.

Omberg L, Golub GH, Alter O.

Proc Natl Acad Sci U S A. 2007 Nov 20;104(47):18371-6. Epub 2007 Nov 14.

12.

Transcriptome profiling of a Saccharomyces cerevisiae mutant with a constitutively activated Ras/cAMP pathway.

Jones DL, Petty J, Hoyle DC, Hayes A, Ragni E, Popolo L, Oliver SG, Stateva LI.

Physiol Genomics. 2003 Dec 16;16(1):107-18.

PMID:
14570984
13.

A temporal hidden Markov regression model for the analysis of gene regulatory networks.

Gupta M, Qu P, Ibrahim JG.

Biostatistics. 2007 Oct;8(4):805-20. Epub 2007 Mar 30.

PMID:
17400597
14.

A novel coherence measure for discovering scaling biclusters from gene expression data.

Mukhopadhyay A, Maulik U, Bandyopadhyay S.

J Bioinform Comput Biol. 2009 Oct;7(5):853-68.

PMID:
19785049
15.

Singular value decomposition for genome-wide expression data processing and modeling.

Alter O, Brown PO, Botstein D.

Proc Natl Acad Sci U S A. 2000 Aug 29;97(18):10101-6.

16.

Analysis techniques for microarray time-series data.

Filkov V, Skiena S, Zhi J.

J Comput Biol. 2002;9(2):317-30.

PMID:
12015884
17.

Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization.

Spellman PT, Sherlock G, Zhang MQ, Iyer VR, Anders K, Eisen MB, Brown PO, Botstein D, Futcher B.

Mol Biol Cell. 1998 Dec;9(12):3273-97.

18.

Hybridization array technology coupled with chemostat culture: Tools to interrogate gene expression in Saccharomyces cerevisiae.

Hayes A, Zhang N, Wu J, Butler PR, Hauser NC, Hoheisel JD, Lim FL, Sharrocks AD, Oliver SG.

Methods. 2002 Mar;26(3):281-90.

PMID:
12054884
19.

Gene function inference from gene expression of deletion mutants.

Bidaut G.

Methods Mol Biol. 2007;408:1-18. doi: 10.1007/978-1-59745-547-3_1.

PMID:
18314574
20.

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