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Items: 1 to 20 of 1157

1.

Transcriptional regulatory networks in Saccharomyces cerevisiae.

Lee TI, Rinaldi NJ, Robert F, Odom DT, Bar-Joseph Z, Gerber GK, Hannett NM, Harbison CT, Thompson CM, Simon I, Zeitlinger J, Jennings EG, Murray HL, Gordon DB, Ren B, Wyrick JJ, Tagne JB, Volkert TL, Fraenkel E, Gifford DK, Young RA.

Science. 2002 Oct 25;298(5594):799-804.

2.

Computational discovery of gene modules and regulatory networks.

Bar-Joseph Z, Gerber GK, Lee TI, Rinaldi NJ, Yoo JY, Robert F, Gordon DB, Fraenkel E, Jaakkola TS, Young RA, Gifford DK.

Nat Biotechnol. 2003 Nov;21(11):1337-42. Epub 2003 Oct 12.

3.

Quantitative characterization of the transcriptional regulatory network in the yeast cell cycle.

Chen HC, Lee HC, Lin TY, Li WH, Chen BS.

Bioinformatics. 2004 Aug 12;20(12):1914-27. Epub 2004 Mar 25.

PMID:
15044243
4.

Reconstructing genetic networks in yeast.

Zhang Z, Gerstein M.

Nat Biotechnol. 2003 Nov;21(11):1295-7. No abstract available.

PMID:
14595359
5.

Transcriptional networks: reverse-engineering gene regulation on a global scale.

Chua G, Robinson MD, Morris Q, Hughes TR.

Curr Opin Microbiol. 2004 Dec;7(6):638-46. Review.

PMID:
15556037
6.

Genomic analysis of regulatory network dynamics reveals large topological changes.

Luscombe NM, Babu MM, Yu H, Snyder M, Teichmann SA, Gerstein M.

Nature. 2004 Sep 16;431(7006):308-12.

7.

A copula method for modeling directional dependence of genes.

Kim JM, Jung YS, Sungur EA, Han KH, Park C, Sohn I.

BMC Bioinformatics. 2008 May 1;9:225. doi: 10.1186/1471-2105-9-225.

8.

Serial regulation of transcriptional regulators in the yeast cell cycle.

Simon I, Barnett J, Hannett N, Harbison CT, Rinaldi NJ, Volkert TL, Wyrick JJ, Zeitlinger J, Gifford DK, Jaakkola TS, Young RA.

Cell. 2001 Sep 21;106(6):697-708.

9.

Transcriptional regulatory network shapes the genome structure of Saccharomyces cerevisiae.

Li S, Heermann DW.

Nucleus. 2013 May-Jun;4(3):216-28. doi: 10.4161/nucl.24875. Epub 2013 May 1.

10.

Specificity and stability in topology of protein networks.

Maslov S, Sneppen K.

Science. 2002 May 3;296(5569):910-3.

11.

Deciphering gene expression regulatory networks.

Wyrick JJ, Young RA.

Curr Opin Genet Dev. 2002 Apr;12(2):130-6. Review.

PMID:
11893484
12.

Identifying regulatory networks by combinatorial analysis of promoter elements.

Pilpel Y, Sudarsanam P, Church GM.

Nat Genet. 2001 Oct;29(2):153-9.

PMID:
11547334
13.

Global analysis of the regulatory network structure of gene expression in Saccharomyces cerevisiae.

Gunji W, Kai T, Takahashi Y, Maki Y, Kurihara W, Utsugi T, Fujimori F, Murakami Y.

DNA Res. 2004 Jun 30;11(3):163-77.

PMID:
15368892
14.

Expression dynamics of a cellular metabolic network.

Kharchenko P, Church GM, Vitkup D.

Mol Syst Biol. 2005;1:2005.0016. Epub 2005 Aug 2.

15.

Refining current knowledge on the yeast FLR1 regulatory network by combined experimental and computational approaches.

Teixeira MC, Dias PJ, Monteiro PT, Sala A, Oliveira AL, Freitas AT, Sá-Correia I.

Mol Biosyst. 2010 Dec;6(12):2471-81. doi: 10.1039/c004881j. Epub 2010 Oct 11.

PMID:
20938527
16.

A specific transcriptional response of yeast cells to camptothecin dependent on the Swi4 and Mbp1 factors.

Lotito L, Russo A, Bueno S, Chillemi G, Fogli MV, Capranico G.

Eur J Pharmacol. 2009 Jan 28;603(1-3):29-36. doi: 10.1016/j.ejphar.2008.12.002. Epub 2008 Dec 9.

PMID:
19094980
17.

Genome-wide expression profiling, in vivo DNA binding analysis, and probabilistic motif prediction reveal novel Abf1 target genes during fermentation, respiration, and sporulation in yeast.

Schlecht U, Erb I, Demougin P, Robine N, Borde V, van Nimwegen E, Nicolas A, Primig M.

Mol Biol Cell. 2008 May;19(5):2193-207. doi: 10.1091/mbc.E07-12-1242. Epub 2008 Feb 27.

18.

Transcriptional regulatory networks and the yeast cell cycle.

Futcher B.

Curr Opin Cell Biol. 2002 Dec;14(6):676-83. Review.

PMID:
12473339
19.

Genome-wide analysis of transcriptional dependence and probable target sites for Abf1 and Rap1 in Saccharomyces cerevisiae.

Yarragudi A, Parfrey LW, Morse RH.

Nucleic Acids Res. 2007;35(1):193-202. Epub 2006 Dec 7.

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