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Isolation and mass spectrometry of transcription factor complexes.

Sebastiaan Winkler G, Lacomis L, Philip J, Erdjument-Bromage H, Svejstrup JQ, Tempst P.

Methods. 2002 Mar;26(3):260-9.


RNA polymerase II elongator holoenzyme is composed of two discrete subcomplexes.

Winkler GS, Petrakis TG, Ethelberg S, Tokunaga M, Erdjument-Bromage H, Tempst P, Svejstrup JQ.

J Biol Chem. 2001 Aug 31;276(35):32743-9. Epub 2001 Jul 2.


Purification and characterization of the 1.0 MDa CCR4-NOT complex identifies two novel components of the complex.

Chen J, Rappsilber J, Chiang YC, Russell P, Mann M, Denis CL.

J Mol Biol. 2001 Dec 7;314(4):683-94.


Purification and characterization of the human elongator complex.

Hawkes NA, Otero G, Winkler GS, Marshall N, Dahmus ME, Krappmann D, Scheidereit C, Thomas CL, Schiavo G, Erdjument-Bromage H, Tempst P, Svejstrup JQ.

J Biol Chem. 2002 Jan 25;277(4):3047-52. Epub 2001 Nov 19.


Sequential peptide affinity purification system for the systematic isolation and identification of protein complexes from Escherichia coli.

Babu M, Butland G, Pogoutse O, Li J, Greenblatt JF, Emili A.

Methods Mol Biol. 2009;564:373-400. doi: 10.1007/978-1-60761-157-8_22.


Cluster analysis of mass spectrometry data reveals a novel component of SAGA.

Powell DW, Weaver CM, Jennings JL, McAfee KJ, He Y, Weil PA, Link AJ.

Mol Cell Biol. 2004 Aug;24(16):7249-59.


Alteration of GCN5 levels in maize reveals dynamic responses to manipulating histone acetylation.

Bhat RA, Riehl M, Santandrea G, Velasco R, Slocombe S, Donn G, Steinbiss HH, Thompson RD, Becker HA.

Plant J. 2003 Feb;33(3):455-69. Erratum in: Plant J. 2003 Aug;35(4):556.


Probing genuine strong interactions and post-translational modifications in the heterogeneous yeast exosome protein complex.

Synowsky SA, van den Heuvel RH, Mohammed S, Pijnappel PW, Heck AJ.

Mol Cell Proteomics. 2006 Sep;5(9):1581-92. Epub 2006 Jul 7.


Direct physical and functional interaction of the NuA4 complex components Yaf9p and Swc4p.

Bittner CB, Zeisig DT, Zeisig BB, Slany RK.

Eukaryot Cell. 2004 Aug;3(4):976-83.


A mammalian mediator subunit that shares properties with Saccharomyces cerevisiae mediator subunit Cse2.

Tomomori-Sato C, Sato S, Parmely TJ, Banks CA, Sorokina I, Florens L, Zybailov B, Washburn MP, Brower CS, Conaway RC, Conaway JW.

J Biol Chem. 2004 Feb 13;279(7):5846-51. Epub 2003 Nov 24.


Probing lysine acetylation in proteins: strategies, limitations, and pitfalls of in vitro acetyltransferase assays.

Dormeyer W, Ott M, Schnölzer M.

Mol Cell Proteomics. 2005 Sep;4(9):1226-39. Epub 2005 Jun 2.


A study of biochemical and functional interactions of Htl1p, a putative component of the Saccharomyces cerevisiae, Rsc chromatin-remodeling complex.

Florio C, Moscariello M, Ederle S, Fasano R, Lanzuolo C, Pulitzer JF.

Gene. 2007 Jun 15;395(1-2):72-85. Epub 2007 Feb 20.


The identification of protein-protein interactions of the nuclear pore complex of Saccharomyces cerevisiae using high throughput matrix-assisted laser desorption ionization time-of-flight tandem mass spectrometry.

Huang L, Baldwin MA, Maltby DA, Medzihradszky KF, Baker PR, Allen N, Rexach M, Edmondson RD, Campbell J, Juhasz P, Martin SA, Vestal ML, Burlingame AL.

Mol Cell Proteomics. 2002 Jun;1(6):434-50.


Human transcription elongation factor NELF: identification of novel subunits and reconstitution of the functionally active complex.

Narita T, Yamaguchi Y, Yano K, Sugimoto S, Chanarat S, Wada T, Kim DK, Hasegawa J, Omori M, Inukai N, Endoh M, Yamada T, Handa H.

Mol Cell Biol. 2003 Mar;23(6):1863-73.


Molecular characterization of Saccharomyces cerevisiae TFIID.

Sanders SL, Garbett KA, Weil PA.

Mol Cell Biol. 2002 Aug;22(16):6000-13.

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