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Items: 1 to 20 of 160

1.

SCOP database in 2002: refinements accommodate structural genomics.

Lo Conte L, Brenner SE, Hubbard TJ, Chothia C, Murzin AG.

Nucleic Acids Res. 2002 Jan 1;30(1):264-7.

2.

SCOP database in 2004: refinements integrate structure and sequence family data.

Andreeva A, Howorth D, Brenner SE, Hubbard TJ, Chothia C, Murzin AG.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D226-9.

3.

Data growth and its impact on the SCOP database: new developments.

Andreeva A, Howorth D, Chandonia JM, Brenner SE, Hubbard TJ, Chothia C, Murzin AG.

Nucleic Acids Res. 2008 Jan;36(Database issue):D419-25. Epub 2007 Nov 13.

4.

SCOP: a structural classification of proteins database.

Lo Conte L, Ailey B, Hubbard TJ, Brenner SE, Murzin AG, Chothia C.

Nucleic Acids Res. 2000 Jan 1;28(1):257-9.

5.

SCOPe: Structural Classification of Proteins--extended, integrating SCOP and ASTRAL data and classification of new structures.

Fox NK, Brenner SE, Chandonia JM.

Nucleic Acids Res. 2014 Jan;42(Database issue):D304-9. doi: 10.1093/nar/gkt1240. Epub 2013 Dec 3.

6.
7.

SCOP: a structural classification of proteins database for the investigation of sequences and structures.

Murzin AG, Brenner SE, Hubbard T, Chothia C.

J Mol Biol. 1995 Apr 7;247(4):536-40.

PMID:
7723011
8.

SCOP: a Structural Classification of Proteins database.

Hubbard TJ, Ailey B, Brenner SE, Murzin AG, Chothia C.

Nucleic Acids Res. 1999 Jan 1;27(1):254-6.

9.

PASS2: a semi-automated database of protein alignments organised as structural superfamilies.

Mallika V, Bhaduri A, Sowdhamini R.

Nucleic Acids Res. 2002 Jan 1;30(1):284-8.

10.

SCOP: a structural classification of proteins database.

Hubbard TJ, Murzin AG, Brenner SE, Chothia C.

Nucleic Acids Res. 1997 Jan 1;25(1):236-9.

12.

The SUPERFAMILY database in structural genomics.

Gough J.

Acta Crystallogr D Biol Crystallogr. 2002 Nov;58(Pt 11):1897-900. Epub 2002 Oct 21. Review.

PMID:
12393919
13.

The ASTRAL Compendium in 2004.

Chandonia JM, Hon G, Walker NS, Lo Conte L, Koehl P, Levitt M, Brenner SE.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D189-92.

14.

DomIns: a web resource for domain insertions in known protein structures.

Selvam RA, Sasidharan R.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D193-5.

15.

AutoSCOP: automated prediction of SCOP classifications using unique pattern-class mappings.

Gewehr JE, Hintermair V, Zimmer R.

Bioinformatics. 2007 May 15;23(10):1203-10. Epub 2007 Mar 22.

PMID:
17379694
16.

fastSCOP: a fast web server for recognizing protein structural domains and SCOP superfamilies.

Tung CH, Yang JM.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W438-43. Epub 2007 May 7.

17.

The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis.

Pearl F, Todd A, Sillitoe I, Dibley M, Redfern O, Lewis T, Bennett C, Marsden R, Grant A, Lee D, Akpor A, Maibaum M, Harrison A, Dallman T, Reeves G, Diboun I, Addou S, Lise S, Johnston C, Sillero A, Thornton J, Orengo C.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D247-51.

18.

SCOP2 prototype: a new approach to protein structure mining.

Andreeva A, Howorth D, Chothia C, Kulesha E, Murzin AG.

Nucleic Acids Res. 2014 Jan;42(Database issue):D310-4. doi: 10.1093/nar/gkt1242. Epub 2013 Nov 29. Erratum in: Nucleic Acids Res. 2014 Oct;42(18):11847.

19.

A high level interface to SCOP and ASTRAL implemented in python.

Casbon JA, Crooks GE, Saqi MA.

BMC Bioinformatics. 2006 Jan 10;7:10.

20.

The SUPERFAMILY database in 2004: additions and improvements.

Madera M, Vogel C, Kummerfeld SK, Chothia C, Gough J.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D235-9.

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