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Items: 1 to 20 of 221

2.

Target gene identification from expression array data by promoter analysis.

Werner T.

Biomol Eng. 2001 Mar;17(3):87-94. Review.

PMID:
11222983
5.

Predicting distinct organization of transcription factor binding sites on the promoter regions: a new genome-based approach to expand human embryonic stem cell regulatory network.

Hosseinpour B, Bakhtiarizadeh MR, Khosravi P, Ebrahimie E.

Gene. 2013 Dec 1;531(2):212-9. doi: 10.1016/j.gene.2013.09.011. Epub 2013 Sep 13.

PMID:
24042128
6.

Genome-wide analysis of factors regulating gene expression in liver.

Teufel A, Weinmann A, Krupp M, Budinger M, Galle PR.

Gene. 2007 Mar 15;389(2):114-21. Epub 2006 Nov 7.

PMID:
17174484
7.

GPMiner: an integrated system for mining combinatorial cis-regulatory elements in mammalian gene group.

Lee TY, Chang WC, Hsu JB, Chang TH, Shien DM.

BMC Genomics. 2012;13 Suppl 1:S3. doi: 10.1186/1471-2164-13-S1-S3. Epub 2012 Jan 17.

8.

A multistep bioinformatic approach detects putative regulatory elements in gene promoters.

Bortoluzzi S, Coppe A, Bisognin A, Pizzi C, Danieli GA.

BMC Bioinformatics. 2005 May 18;6:121.

9.

Comparing expression profiles of genes with similar promoter regions.

Park PJ, Butte AJ, Kohane IS.

Bioinformatics. 2002 Dec;18(12):1576-84.

PMID:
12490441
10.

A concept for ab initio prediction of cis-regulatory modules.

Ecker K, Welch L.

In Silico Biol. 2009;9(5-6):285-306. doi: 10.3233/ISB-2009-0407.

PMID:
22430433
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14.

Identification of co-regulated genes through Bayesian clustering of predicted regulatory binding sites.

Qin ZS, McCue LA, Thompson W, Mayerhofer L, Lawrence CE, Liu JS.

Nat Biotechnol. 2003 Apr;21(4):435-9. Epub 2003 Mar 10.

PMID:
12627170
15.

CREME: a framework for identifying cis-regulatory modules in human-mouse conserved segments.

Sharan R, Ovcharenko I, Ben-Hur A, Karp RM.

Bioinformatics. 2003;19 Suppl 1:i283-91.

PMID:
12855471
16.

Identifying promoter features of co-regulated genes with similar network motifs.

Harari O, del Val C, Romero-Zaliz R, Shin D, Huang H, Groisman EA, Zwir I.

BMC Bioinformatics. 2009 Apr 29;10 Suppl 4:S1. doi: 10.1186/1471-2105-10-S4-S1.

17.

RNA polymerase II binding patterns reveal genomic regions involved in microRNA gene regulation.

Wang G, Wang Y, Shen C, Huang YW, Huang K, Huang TH, Nephew KP, Li L, Liu Y.

PLoS One. 2010 Nov 2;5(11):e13798. doi: 10.1371/journal.pone.0013798.

18.

Characterization of the human p11 promoter sequence.

Huang X, Pawliczak R, Yao XL, Madara P, Alsaaty S, Shelhamer JH, Cowan MJ.

Gene. 2003 May 22;310:133-42.

PMID:
12801640
19.

Promoter-sharing by different genes in human genome--CPNE1 and RBM12 gene pair as an example.

Yang W, Ng P, Zhao M, Wong TK, Yiu SM, Lau YL.

BMC Genomics. 2008 Oct 3;9:456. doi: 10.1186/1471-2164-9-456.

20.

Computer-assisted identification of cell cycle-related genes: new targets for E2F transcription factors.

Kel AE, Kel-Margoulis OV, Farnham PJ, Bartley SM, Wingender E, Zhang MQ.

J Mol Biol. 2001 May 25;309(1):99-120.

PMID:
11491305

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