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Items: 1 to 20 of 106

1.

A greedy algorithm for aligning DNA sequences.

Zhang Z, Schwartz S, Wagner L, Miller W.

J Comput Biol. 2000 Feb-Apr;7(1-2):203-14.

PMID:
10890397
2.

Fast, optimal alignment of three sequences using linear gap costs.

Powell DR, Allison L, Dix TI.

J Theor Biol. 2000 Dec 7;207(3):325-36.

PMID:
11082303
3.

Aligning a DNA sequence with a protein sequence.

Zhang Z, Pearson WR, Miller W.

J Comput Biol. 1997 Fall;4(3):339-49.

PMID:
9278064
4.

Alignments of DNA and protein sequences containing frameshift errors.

Guan X, Uberbacher EC.

Comput Appl Biosci. 1996 Feb;12(1):31-40.

PMID:
8670617
5.

Multiple sequence alignment using an exhaustive and greedy algorithm.

Wang Y, Li KB.

J Bioinform Comput Biol. 2005 Apr;3(2):243-55.

PMID:
15852503
6.
7.

A tool for aligning very similar DNA sequences.

Chao KM, Zhang J, Ostell J, Miller W.

Comput Appl Biosci. 1997 Feb;13(1):75-80.

PMID:
9088712
8.

Winnowing sequences from a database search.

Berman P, Zhang Z, Wolf YI, Koonin EV, Miller W.

J Comput Biol. 2000 Feb-Apr;7(1-2):293-302.

PMID:
10890403
9.
10.

A mini-greedy algorithm for faster structural RNA stem-loop search.

Gorodkin J, Lyngso RB, Stormo GD.

Genome Inform. 2001;12:184-93.

PMID:
11791237
11.

SIMD parallelization of the WORDUP algorithm for detecting statistically significant patterns in DNA sequences.

Liuni S, Prunella N, Pesole G, D'Orazio T, Stella E, Distante A.

Comput Appl Biosci. 1993 Dec;9(6):701-7.

PMID:
8143157
12.

A global approach for contig construction.

Gleizes A, Hénaut A.

Comput Appl Biosci. 1994 Jul;10(4):401-8.

PMID:
7804872
13.

MacVector: aligning sequences.

Olson SA.

Methods Mol Biol. 1994;25:203-14. No abstract available.

PMID:
8004166
14.

Super pairwise alignment (SPA): an efficient approach to global alignment for homologous sequences.

Shen SY, Yang J, Yao A, Hwang PI.

J Comput Biol. 2002;9(3):477-86.

PMID:
12162887
15.

SIGNAL SCAN 4.0: additional databases and sequence formats.

Prestridge DS.

Comput Appl Biosci. 1996 Apr;12(2):157-60.

PMID:
8744779
16.

Pro-Frame: similarity-based gene recognition in eukaryotic DNA sequences with errors.

Mironov AA, Novichkov PS, Gelfand MS.

Bioinformatics. 2001 Jan;17(1):13-5.

PMID:
11222258
17.

RNAlign program: alignment of RNA sequences using both primary and secondary structures.

Corpet F, Michot B.

Comput Appl Biosci. 1994 Jul;10(4):389-99.

PMID:
7528630
18.

Mapping short DNA sequencing reads and calling variants using mapping quality scores.

Li H, Ruan J, Durbin R.

Genome Res. 2008 Nov;18(11):1851-8. doi: 10.1101/gr.078212.108. Epub 2008 Aug 19.

19.
20.

Dynamite: a flexible code generating language for dynamic programming methods used in sequence comparison.

Birney E, Durbin R.

Proc Int Conf Intell Syst Mol Biol. 1997;5:56-64.

PMID:
9322016

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