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Items: 1 to 20 of 287

1.

Identifying DNA and protein patterns with statistically significant alignments of multiple sequences.

Hertz GZ, Stormo GD.

Bioinformatics. 1999 Jul-Aug;15(7-8):563-77.

PMID:
10487864
2.

Multiple DNA and protein sequence alignment based on segment-to-segment comparison.

Morgenstern B, Dress A, Werner T.

Proc Natl Acad Sci U S A. 1996 Oct 29;93(22):12098-103.

3.

Identification of common motifs in unaligned DNA sequences: application to Escherichia coli Lrp regulon.

Fraenkel YM, Mandel Y, Friedberg D, Margalit H.

Comput Appl Biosci. 1995 Aug;11(4):379-87.

PMID:
8521047
4.

AL2CO: calculation of positional conservation in a protein sequence alignment.

Pei J, Grishin NV.

Bioinformatics. 2001 Aug;17(8):700-12.

PMID:
11524371
5.

ProMSED: protein multiple sequence editor for Windows 3.11/95.

Frolov AS, Pika IS, Eroshkin AM.

Comput Appl Biosci. 1997 Jun;13(3):243-8.

PMID:
9183528
6.

Prediction of functional specificity determinants from protein sequences using log-likelihood ratios.

Pei J, Cai W, Kinch LN, Grishin NV.

Bioinformatics. 2006 Jan 15;22(2):164-71.

PMID:
16278237
7.

Identification of consensus patterns in unaligned DNA sequences known to be functionally related.

Hertz GZ, Hartzell GW 3rd, Stormo GD.

Comput Appl Biosci. 1990 Apr;6(2):81-92.

PMID:
2193692
8.

Combining many multiple alignments in one improved alignment.

Bucka-Lassen K, Caprani O, Hein J.

Bioinformatics. 1999 Feb;15(2):122-30.

PMID:
10089197
9.
10.
11.

Identifying target sites for cooperatively binding factors.

GuhaThakurta D, Stormo GD.

Bioinformatics. 2001 Jul;17(7):608-21.

PMID:
11448879
12.

Murlet: a practical multiple alignment tool for structural RNA sequences.

Kiryu H, Tabei Y, Kin T, Asai K.

Bioinformatics. 2007 Jul 1;23(13):1588-98.

PMID:
17459961
13.

On the quality of tree-based protein classification.

Lazareva-Ulitsky B, Diemer K, Thomas PD.

Bioinformatics. 2005 May 1;21(9):1876-90.

PMID:
15647305
14.

Towards a reliable objective function for multiple sequence alignments.

Thompson JD, Plewniak F, Ripp R, Thierry JC, Poch O.

J Mol Biol. 2001 Dec 7;314(4):937-51.

PMID:
11734009
15.

A structure-based method for protein sequence alignment.

Kann MG, Thiessen PA, Panchenko AR, Schäffer AA, Altschul SF, Bryant SH.

Bioinformatics. 2005 Apr 15;21(8):1451-6.

PMID:
15613392
16.

Sigma: multiple alignment of weakly-conserved non-coding DNA sequence.

Siddharthan R.

BMC Bioinformatics. 2006 Mar 16;7:143.

19.

Ancestral sequence alignment under optimal conditions.

Hudek AK, Brown DG.

BMC Bioinformatics. 2005 Nov 17;6:273.

20.

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