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Items: 1 to 20 of 137

1.

Folding funnels, binding funnels, and protein function.

Tsai CJ, Kumar S, Ma B, Nussinov R.

Protein Sci. 1999 Jun;8(6):1181-90. Review.

2.

Folding funnels and conformational transitions via hinge-bending motions.

Kumar S, Ma B, Tsai CJ, Wolfson H, Nussinov R.

Cell Biochem Biophys. 1999;31(2):141-64. Review.

PMID:
10593256
3.

Folding funnels and binding mechanisms.

Ma B, Kumar S, Tsai CJ, Nussinov R.

Protein Eng. 1999 Sep;12(9):713-20. Review.

PMID:
10506280
4.

Protein folding funnels: a kinetic approach to the sequence-structure relationship.

Leopold PE, Montal M, Onuchic JN.

Proc Natl Acad Sci U S A. 1992 Sep 15;89(18):8721-5.

5.

A sequential binding mechanism in a PDZ domain.

Chi CN, Bach A, Engström A, Wang H, Strømgaard K, Gianni S, Jemth P.

Biochemistry. 2009 Aug 4;48(30):7089-97. doi: 10.1021/bi900559k.

PMID:
19496620
6.

Simple energy landscape model for the kinetics of functional transitions in proteins.

Miyashita O, Wolynes PG, Onuchic JN.

J Phys Chem B. 2005 Feb 10;109(5):1959-69.

PMID:
16851180
7.

Using robotics to fold proteins and dock ligands.

Brutlag D, Apaydin S, Guestrin C, Hsu D, Varma C, Singh A, Latombe JC.

Bioinformatics. 2002;18 Suppl 2:S74.

PMID:
12385986
8.

The building block folding model and the kinetics of protein folding.

Tsai CJ, Nussinov R.

Protein Eng. 2001 Oct;14(10):723-33.

PMID:
11739890
9.

Folding and binding cascades: dynamic landscapes and population shifts.

Kumar S, Ma B, Tsai CJ, Sinha N, Nussinov R.

Protein Sci. 2000 Jan;9(1):10-9. Review.

10.

Temperature effects on the nucleation mechanism of protein folding and on the barrierless thermal denaturation of a native protein.

Djikaev YS, Ruckenstein E.

Phys Chem Chem Phys. 2008 Nov 7;10(41):6281-300. doi: 10.1039/b807399f. Epub 2008 Sep 10.

PMID:
18936853
11.

Implications of protein conformational diversity for binding and development of new biological active compounds.

Valente AP, Miyamoto CA, Almeida FC.

Curr Med Chem. 2006;13(30):3697-703. Review.

PMID:
17168731
12.

Folding of elongated proteins: conventional or anomalous?

Hagai T, Levy Y.

J Am Chem Soc. 2008 Oct 29;130(43):14253-62. doi: 10.1021/ja804280p. Epub 2008 Oct 4.

PMID:
18834131
13.

Probing invisible, low-populated States of protein molecules by relaxation dispersion NMR spectroscopy: an application to protein folding.

Korzhnev DM, Kay LE.

Acc Chem Res. 2008 Mar;41(3):442-51. doi: 10.1021/ar700189y. Epub 2008 Feb 15. Review.

PMID:
18275162
14.

Allosteric coupling and conformational fluctuations in proteins.

Onaran HO, Costa T.

Curr Protein Pept Sci. 2009 Apr;10(2):110-5.

PMID:
19355978
15.
16.

Folding of horse cytochrome c in the reduced state.

Bhuyan AK, Udgaonkar JB.

J Mol Biol. 2001 Oct 5;312(5):1135-60.

PMID:
11580255
17.

Direct measurement of barrier heights in protein folding.

Naganathan AN, Sanchez-Ruiz JM, Muñoz V.

J Am Chem Soc. 2005 Dec 28;127(51):17970-1.

PMID:
16366525
18.

Interaction cutoff effect on ruggedness of protein-protein energy landscape.

Ruvinsky AM, Vakser IA.

Proteins. 2008 Mar;70(4):1498-505.

PMID:
17910068
19.
20.

Kinetic intermediates in the folding of gaseous protein ions characterized by electron capture dissociation mass spectrometry.

Horn DM, Breuker K, Frank AJ, McLafferty FW.

J Am Chem Soc. 2001 Oct 10;123(40):9792-9.

PMID:
11583540

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