Sequence analysis of the Lactobacillus temperate phage Sha1

Arch Virol. 2011 Sep;156(9):1681-4. doi: 10.1007/s00705-011-1048-2. Epub 2011 Jun 24.

Abstract

Bacteriophage Sha1, a newly isolated temperate phage from a mitomycin-C-induced lysate of Lactobacillus plantarum isolated from Kimchi, has an isometric head (58 nm × 60 nm) and a long tail (259 nm × 11 nm). The double-strand DNA genome of the phage Sha1 was 41,726 base pairs (bp) long, with a G+C content of 40.61%. Bioinformatic analysis of Sha1 shows that this phage contains 58 putative open reading frames (ORFs). Sha1 can be classified as a member of the large family Siphoviridae by genomic structure and morphology. To our knowledge, this is the first report of genomic sequencing and characterization of temperate phage Sha1 from wild-type L. plantarum isolated from kimchi in Korea.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacteriophages / classification
  • Bacteriophages / genetics*
  • Base Sequence
  • DNA / genetics
  • DNA, Viral / genetics
  • Food Microbiology
  • Genome, Viral*
  • Lactobacillus plantarum / virology*
  • Molecular Sequence Data
  • Republic of Korea

Substances

  • DNA, Viral
  • DNA

Associated data

  • GENBANK/HQ141411