Reassessment of genotype 1 hepatitis C virus subtype misclassification by LiPA 2.0: implications for direct-acting antiviral treatment

J Clin Microbiol. 2014 Nov;52(11):4027-9. doi: 10.1128/JCM.02209-14. Epub 2014 Aug 20.

Abstract

The accuracy of LiPA 2.0 for hepatitis C virus 1 (HCV-1) subtype classification was analyzed. LiPA 2.0 genotype results from 101 HCV-1-infected patients were compared to genotype findings determined by direct core sequencing. Eleven (11%) samples were misclassified. Given the influence of the HCV-1-subtype in the anti-HCV therapy response, an alternative classification method is warranted.

Publication types

  • Comparative Study
  • Evaluation Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adult
  • Antiviral Agents / therapeutic use*
  • Female
  • Genotype
  • Hepacivirus / classification*
  • Hepacivirus / genetics*
  • Hepacivirus / isolation & purification
  • Hepatitis C, Chronic / drug therapy
  • Hepatitis C, Chronic / virology*
  • Humans
  • Male
  • Middle Aged
  • Molecular Sequence Data
  • RNA, Viral / genetics
  • Sequence Analysis, DNA

Substances

  • Antiviral Agents
  • RNA, Viral

Associated data

  • GENBANK/KJ739737
  • GENBANK/KJ739738
  • GENBANK/KJ739739
  • GENBANK/KJ739740
  • GENBANK/KJ739741
  • GENBANK/KJ739742
  • GENBANK/KJ739743
  • GENBANK/KJ739744
  • GENBANK/KJ739745
  • GENBANK/KJ739746
  • GENBANK/KJ739747
  • GENBANK/KJ739748
  • GENBANK/KJ739749
  • GENBANK/KJ739750
  • GENBANK/KJ739751
  • GENBANK/KJ739752
  • GENBANK/KJ739753
  • GENBANK/KJ739754
  • GENBANK/KJ739755
  • GENBANK/KJ739756
  • GENBANK/KJ739757
  • GENBANK/KJ739758
  • GENBANK/KJ739759
  • GENBANK/KJ739760
  • GENBANK/KJ739761
  • GENBANK/KJ739762
  • GENBANK/KJ739763
  • GENBANK/KJ739764
  • GENBANK/KJ739765
  • GENBANK/KJ739766
  • GENBANK/KJ739767
  • GENBANK/KJ739768
  • GENBANK/KJ739769
  • GENBANK/KJ739770
  • GENBANK/KJ739771
  • GENBANK/KJ739772
  • GENBANK/KJ739773
  • GENBANK/KJ739774
  • GENBANK/KJ739775
  • GENBANK/KJ739776
  • GENBANK/KJ739777
  • GENBANK/KJ739778
  • GENBANK/KJ739779
  • GENBANK/KJ739780
  • GENBANK/KJ739781
  • GENBANK/KJ739782
  • GENBANK/KJ739783
  • GENBANK/KJ739784
  • GENBANK/KJ739785
  • GENBANK/KJ739786