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Items: 1 to 20 of 39

1.

Copy number variation is associated with gene expression change in archaea.

Dulmage KA, Darnell CL, Vreugdenhil A, Schmid AK.

Microb Genom. 2018 Sep;4(9). doi: 10.1099/mgen.0.000210. Epub 2018 Aug 24.

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Novel pili-like surface structures of Halobacterium salinarum strain R1 are crucial for surface adhesion.

Losensky G, Vidakovic L, Klingl A, Pfeifer F, Fröls S.

Front Microbiol. 2015 Jan 13;5:755. doi: 10.3389/fmicb.2014.00755. eCollection 2014.

4.

Properties of Halococcus salifodinae, an Isolate from Permian Rock Salt Deposits, Compared with Halococci from Surface Waters.

Legat A, Denner EB, Dornmayr-Pfaffenhuemer M, Pfeiffer P, Knopf B, Claus H, Gruber C, König H, Wanner G, Stan-Lotter H.

Life (Basel). 2013 Feb 28;3(1):244-59. doi: 10.3390/life3010244.

5.

Ori-Finder 2, an integrated tool to predict replication origins in the archaeal genomes.

Luo H, Zhang CT, Gao F.

Front Microbiol. 2014 Sep 15;5:482. doi: 10.3389/fmicb.2014.00482. eCollection 2014.

6.

Divalent metal ion-induced folding mechanism of RNase H1 from extreme halophilic archaeon Halobacterium sp. NRC-1.

Tannous E, Kanaya S.

PLoS One. 2014 Sep 30;9(9):e109016. doi: 10.1371/journal.pone.0109016. eCollection 2014.

7.

Transcription start site associated RNAs (TSSaRNAs) are ubiquitous in all domains of life.

Zaramela LS, Vêncio RZ, ten-Caten F, Baliga NS, Koide T.

PLoS One. 2014 Sep 19;9(9):e107680. doi: 10.1371/journal.pone.0107680. eCollection 2014.

8.

An evolutionarily conserved RNase-based mechanism for repression of transcriptional positive autoregulation.

Wurtmann EJ, Ratushny AV, Pan M, Beer KD, Aitchison JD, Baliga NS.

Mol Microbiol. 2014 Apr;92(2):369-82. doi: 10.1111/mmi.12564. Epub 2014 Mar 19.

9.

Model organisms retain an "ecological memory" of complex ecologically relevant environmental variation.

Beer KD, Wurtmann EJ, Pinel N, Baliga NS.

Appl Environ Microbiol. 2014 Mar;80(6):1821-31. doi: 10.1128/AEM.03280-13. Epub 2014 Jan 10.

10.

Bioengineering radioresistance by overproduction of RPA, a mammalian-type single-stranded DNA-binding protein, in a halophilic archaeon.

Karan R, DasSarma P, Balcer-Kubiczek E, Weng RR, Liao CC, Goodlett DR, Ng WV, Dassarma S.

Appl Microbiol Biotechnol. 2014 Feb;98(4):1737-47. doi: 10.1007/s00253-013-5368-x. Epub 2013 Nov 29.

11.

GenomeFingerprinter: the genome fingerprint and the universal genome fingerprint analysis for systematic comparative genomics.

Ai Y, Ai H, Meng F, Zhao L.

PLoS One. 2013 Oct 29;8(10):e77912. doi: 10.1371/journal.pone.0077912. eCollection 2013.

12.

Subcommittee on the taxonomy of Halobacteriaceae and Subcommittee on the taxonomy of Halomonadaceae: minutes of the joint open meeting, 24 June 2013, Storrs, Connecticut, USA.

Oren A, Ventosa A.

Int J Syst Evol Microbiol. 2013 Sep;63(Pt 9):3540-4. doi: 10.1099/ijs.0.055988-0. No abstract available.

13.

Stitching gene fragments with a network matching algorithm improves gene assembly for metagenomics.

Wu YW, Rho M, Doak TG, Ye Y.

Bioinformatics. 2012 Sep 15;28(18):i363-i369. doi: 10.1093/bioinformatics/bts388.

14.

Sequencing of seven haloarchaeal genomes reveals patterns of genomic flux.

Lynch EA, Langille MG, Darling A, Wilbanks EG, Haltiner C, Shao KS, Starr MO, Teiling C, Harkins TT, Edwards RA, Eisen JA, Facciotti MT.

PLoS One. 2012;7(7):e41389. doi: 10.1371/journal.pone.0041389. Epub 2012 Jul 24.

15.

The RosR transcription factor is required for gene expression dynamics in response to extreme oxidative stress in a hypersaline-adapted archaeon.

Sharma K, Gillum N, Boyd JL, Schmid A.

BMC Genomics. 2012 Jul 30;13:351. doi: 10.1186/1471-2164-13-351.

16.

Prokaryotic diversity in Aran-Bidgol salt lake, the largest hypersaline playa in Iran.

Makhdoumi-Kakhki A, Amoozegar MA, Kazemi B, Pašić L, Ventosa A.

Microbes Environ. 2012;27(1):87-93. Epub 2011 Dec 15.

17.

Transcriptome-wide discovery of circular RNAs in Archaea.

Danan M, Schwartz S, Edelheit S, Sorek R.

Nucleic Acids Res. 2012 Apr;40(7):3131-42. doi: 10.1093/nar/gkr1009. Epub 2011 Dec 2.

18.

Niche adaptation by expansion and reprogramming of general transcription factors.

Turkarslan S, Reiss DJ, Gibbins G, Su WL, Pan M, Bare JC, Plaisier CL, Baliga NS.

Mol Syst Biol. 2011 Nov 22;7:554. doi: 10.1038/msb.2011.87.

19.

Translationally optimal codons associate with aggregation-prone sites in proteins.

Lee Y, Zhou T, Tartaglia GG, Vendruscolo M, Wilke CO.

Proteomics. 2010 Dec;10(23):4163-71. doi: 10.1002/pmic.201000229.

20.

Estimating the fraction of non-coding RNAs in mammalian transcriptomes.

Xin Y, Quarta G, Gan HH, Schlick T.

Bioinform Biol Insights. 2008 Mar 1;2:75-94.

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