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Items: 1 to 20 of 58


Mechanism of translational regulation by miR-2 from sites in the 5' untranslated region or the open reading frame.

Moretti F, Thermann R, Hentze MW.

RNA. 2010 Dec;16(12):2493-502. doi: 10.1261/rna.2384610. Epub 2010 Oct 21.


How threshold behaviour affects the use of subgraphs for network comparison.

Rito T, Wang Z, Deane CM, Reinert G.

Bioinformatics. 2010 Sep 15;26(18):i611-7. doi: 10.1093/bioinformatics/btq386.


The human-bacterial pathogen protein interaction networks of Bacillus anthracis, Francisella tularensis, and Yersinia pestis.

Dyer MD, Neff C, Dufford M, Rivera CG, Shattuck D, Bassaganya-Riera J, Murali TM, Sobral BW.

PLoS One. 2010 Aug 9;5(8):e12089. doi: 10.1371/journal.pone.0012089.


Integrating quantitative proteomics and metabolomics with a genome-scale metabolic network model.

Yizhak K, Benyamini T, Liebermeister W, Ruppin E, Shlomi T.

Bioinformatics. 2010 Jun 15;26(12):i255-60. doi: 10.1093/bioinformatics/btq183.


Role of the snRNAs in spliceosomal active site.

Valadkhan S.

RNA Biol. 2010 May-Jun;7(3):345-53. Epub 2010 May 16. Review.


A splicing-independent function of SF2/ASF in microRNA processing.

Wu H, Sun S, Tu K, Gao Y, Xie B, Krainer AR, Zhu J.

Mol Cell. 2010 Apr 9;38(1):67-77. doi: 10.1016/j.molcel.2010.02.021.


Recognition of a signal peptide by the signal recognition particle.

Janda CY, Li J, Oubridge C, Hernández H, Robinson CV, Nagai K.

Nature. 2010 May 27;465(7297):507-10. doi: 10.1038/nature08870. Epub 2010 Apr 4.


Evidence for large complex networks of plant short silencing RNAs.

MacLean D, Elina N, Havecker ER, Heimstaedt SB, Studholme DJ, Baulcombe DC.

PLoS One. 2010 Mar 26;5(3):e9901. doi: 10.1371/journal.pone.0009901.


miRSel: automated extraction of associations between microRNAs and genes from the biomedical literature.

Naeem H, Küffner R, Csaba G, Zimmer R.

BMC Bioinformatics. 2010 Mar 16;11:135. doi: 10.1186/1471-2105-11-135.


Structural characterization and modeling of ncRNA-protein interactions.

Nacher JC, Araki N.

Biosystems. 2010 Jul;101(1):10-9. doi: 10.1016/j.biosystems.2010.02.005. Epub 2010 Mar 4.


miRBase: microRNA sequences and annotation.

Griffiths-Jones S.

Curr Protoc Bioinformatics. 2010 Mar;Chapter 12:Unit 12.9.1-10. doi: 10.1002/0471250953.bi1209s29.


HMGA1a trapping of U1 snRNP at an authentic 5' splice site induces aberrant exon skipping in sporadic Alzheimer's disease.

Ohe K, Mayeda A.

Mol Cell Biol. 2010 May;30(9):2220-8. doi: 10.1128/MCB.00114-10. Epub 2010 Mar 1.


The splicing regulator Sam68 binds to a novel exonic splicing silencer and functions in SMN2 alternative splicing in spinal muscular atrophy.

Pedrotti S, Bielli P, Paronetto MP, Ciccosanti F, Fimia GM, Stamm S, Manley JL, Sette C.

EMBO J. 2010 Apr 7;29(7):1235-47. doi: 10.1038/emboj.2010.19. Epub 2010 Feb 25.


Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments.

Bullard JH, Purdom E, Hansen KD, Dudoit S.

BMC Bioinformatics. 2010 Feb 18;11:94. doi: 10.1186/1471-2105-11-94.


The genetic landscape of a cell.

Costanzo M, Baryshnikova A, Bellay J, Kim Y, Spear ED, Sevier CS, Ding H, Koh JL, Toufighi K, Mostafavi S, Prinz J, St Onge RP, VanderSluis B, Makhnevych T, Vizeacoumar FJ, Alizadeh S, Bahr S, Brost RL, Chen Y, Cokol M, Deshpande R, Li Z, Lin ZY, Liang W, Marback M, Paw J, San Luis BJ, Shuteriqi E, Tong AH, van Dyk N, Wallace IM, Whitney JA, Weirauch MT, Zhong G, Zhu H, Houry WA, Brudno M, Ragibizadeh S, Papp B, Pál C, Roth FP, Giaever G, Nislow C, Troyanskaya OG, Bussey H, Bader GD, Gingras AC, Morris QD, Kim PM, Kaiser CA, Myers CL, Andrews BJ, Boone C.

Science. 2010 Jan 22;327(5964):425-31. doi: 10.1126/science.1180823.


An integrative -omics approach to identify functional sub-networks in human colorectal cancer.

Nibbe RK, Koyutürk M, Chance MR.

PLoS Comput Biol. 2010 Jan 15;6(1):e1000639. doi: 10.1371/journal.pcbi.1000639.


Release of SF3 from the intron branchpoint activates the first step of pre-mRNA splicing.

Lardelli RM, Thompson JX, Yates JR 3rd, Stevens SW.

RNA. 2010 Mar;16(3):516-28. doi: 10.1261/rna.2030510. Epub 2010 Jan 20.


Reconstructing transcriptional regulatory networks through genomics data.

Sun N, Zhao H.

Stat Methods Med Res. 2009 Dec;18(6):595-617. doi: 10.1177/0962280209351890.


RNA processing and its regulation: global insights into biological networks.

Licatalosi DD, Darnell RB.

Nat Rev Genet. 2010 Jan;11(1):75-87. doi: 10.1038/nrg2673. Review.


Exploring complex miRNA-mRNA interactions with Bayesian networks by splitting-averaging strategy.

Liu B, Li J, Tsykin A, Liu L, Gaur AB, Goodall GJ.

BMC Bioinformatics. 2009 Dec 10;10:408. doi: 10.1186/1471-2105-10-408.

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