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The last universal common ancestor: emergence, constitution and genetic legacy of an elusive forerunner.

Glansdorff N, Xu Y, Labedan B.

Biol Direct. 2008 Jul 9;3:29. doi: 10.1186/1745-6150-3-29. Review.


Processing of G4 DNA by Dna2 helicase/nuclease and replication protein A (RPA) provides insights into the mechanism of Dna2/RPA substrate recognition.

Masuda-Sasa T, Polaczek P, Peng XP, Chen L, Campbell JL.

J Biol Chem. 2008 Sep 5;283(36):24359-73. doi: 10.1074/jbc.M802244200. Epub 2008 Jun 30.


Comparative proteogenomics: combining mass spectrometry and comparative genomics to analyze multiple genomes.

Gupta N, Benhamida J, Bhargava V, Goodman D, Kain E, Kerman I, Nguyen N, Ollikainen N, Rodriguez J, Wang J, Lipton MS, Romine M, Bafna V, Smith RD, Pevzner PA.

Genome Res. 2008 Jul;18(7):1133-42. doi: 10.1101/gr.074344.107. Epub 2008 Apr 21.


Genomic context analysis in Archaea suggests previously unrecognized links between DNA replication and translation.

Berthon J, Cortez D, Forterre P.

Genome Biol. 2008 Apr 9;9(4):R71. doi: 10.1186/gb-2008-9-4-r71.


Functional characterization of recombinant prefoldin complexes from a hyperthermophilic archaeon, Thermococcus sp. strain KS-1.

Iizuka R, Sugano Y, Ide N, Ohtaki A, Yoshida T, Fujiwara S, Imanaka T, Yohda M.

J Mol Biol. 2008 Mar 28;377(3):972-83. doi: 10.1016/j.jmb.2008.01.070. Epub 2008 Feb 2.


The yeast ribosome synthesis factor Emg1 is a novel member of the superfamily of alpha/beta knot fold methyltransferases.

Leulliot N, Bohnsack MT, Graille M, Tollervey D, Van Tilbeurgh H.

Nucleic Acids Res. 2008 Feb;36(2):629-39. Epub 2007 Dec 6.


Structural insights into the interaction of the evolutionarily conserved ZPR1 domain tandem with eukaryotic EF1A, receptors, and SMN complexes.

Mishra AK, Gangwani L, Davis RJ, Lambright DG.

Proc Natl Acad Sci U S A. 2007 Aug 28;104(35):13930-5. Epub 2007 Aug 17.


The human RNA kinase hClp1 is active on 3' transfer RNA exons and short interfering RNAs.

Weitzer S, Martinez J.

Nature. 2007 May 10;447(7141):222-6.


Structural insights into a new homodimeric self-activated GTPase family.

Gras S, Chaumont V, Fernandez B, Carpentier P, Charrier-Savournin F, Schmitt S, Pineau C, Flament D, Hecker A, Forterre P, Armengaud J, Housset D.

EMBO Rep. 2007 Jun;8(6):569-75. Epub 2007 Apr 20.


Large-scale identification of N-terminal peptides in the halophilic archaea Halobacterium salinarum and Natronomonas pharaonis.

Aivaliotis M, Gevaert K, Falb M, Tebbe A, Konstantinidis K, Bisle B, Klein C, Martens L, Staes A, Timmerman E, Van Damme J, Siedler F, Pfeiffer F, Vandekerckhove J, Oesterhelt D.

J Proteome Res. 2007 Jun;6(6):2195-204. Epub 2007 Apr 20.


The Shwachman-Bodian-Diamond syndrome protein mediates translational activation of ribosomes in yeast.

Menne TF, Goyenechea B, Sánchez-Puig N, Wong CC, Tonkin LM, Ancliff PJ, Brost RL, Costanzo M, Boone C, Warren AJ.

Nat Genet. 2007 Apr;39(4):486-95. Epub 2007 Mar 11.


Reconstitution, activities, and structure of the eukaryotic RNA exosome.

Liu Q, Greimann JC, Lima CD.

Cell. 2006 Dec 15;127(6):1223-37. Erratum in: Cell. 2007 Oct 5;131(1):188-9.


Identification in archaea of a novel D-Tyr-tRNATyr deacylase.

Ferri-Fioni ML, Fromant M, Bouin AP, Aubard C, Lazennec C, Plateau P, Blanquet S.

J Biol Chem. 2006 Sep 15;281(37):27575-85. Epub 2006 Jul 13.


The origin of viruses and their possible roles in major evolutionary transitions.

Forterre P.

Virus Res. 2006 Apr;117(1):5-16. Epub 2006 Feb 14. Review.


A family portrait of the RIO kinases.

LaRonde-LeBlanc N, Wlodawer A.

J Biol Chem. 2005 Nov 11;280(45):37297-300. Epub 2005 Sep 22.


Deciphering structure and topology of conserved COG2042 orphan proteins.

Armengaud J, Dedieu A, Solques O, Pellequer JL, Quemeneur E.

BMC Struct Biol. 2005 Feb 8;5:3.


'Conserved hypothetical' proteins: prioritization of targets for experimental study.

Galperin MY, Koonin EV.

Nucleic Acids Res. 2004 Oct 12;32(18):5452-63. Print 2004. Review.


The complete genome and proteome of Mycoplasma mobile.

Jaffe JD, Stange-Thomann N, Smith C, DeCaprio D, Fisher S, Butler J, Calvo S, Elkins T, FitzGerald MG, Hafez N, Kodira CD, Major J, Wang S, Wilkinson J, Nicol R, Nusbaum C, Birren B, Berg HC, Church GM.

Genome Res. 2004 Aug;14(8):1447-61.


N2-methylation of guanosine at position 10 in tRNA is catalyzed by a THUMP domain-containing, S-adenosylmethionine-dependent methyltransferase, conserved in Archaea and Eukaryota.

Armengaud J, Urbonavicius J, Fernandez B, Chaussinand G, Bujnicki JM, Grosjean H.

J Biol Chem. 2004 Aug 27;279(35):37142-52. Epub 2004 Jun 20.

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