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Items: 1 to 20 of 42


Genome Sequencing and Comparative Transcriptomics Provide a Holistic View of 4-Nitrophenol Degradation and Concurrent Fatty Acid Catabolism by Rhodococcus sp. Strain BUPNP1.

Sengupta K, Swain MT, Livingstone PG, Whitworth DE, Saha P.

Front Microbiol. 2019 Jan 4;9:3209. doi: 10.3389/fmicb.2018.03209. eCollection 2018.


Genome Sequencing and Pan-Genome Analysis of 23 Corallococcus spp. Strains Reveal Unexpected Diversity, With Particular Plasticity of Predatory Gene Sets.

Livingstone PG, Morphew RM, Whitworth DE.

Front Microbiol. 2018 Dec 19;9:3187. doi: 10.3389/fmicb.2018.03187. eCollection 2018.


Genome Analysis, Metabolic Potential, and Predatory Capabilities of Herpetosiphon llansteffanense sp. nov.

Livingstone PG, Morphew RM, Cookson AR, Whitworth DE.

Appl Environ Microbiol. 2018 Oct 30;84(22). pii: e01040-18. doi: 10.1128/AEM.01040-18. Print 2018 Nov 15.


Interspecies conflict affects RNA expression.

Whitworth DE.

FEMS Microbiol Lett. 2018 May 1;365(10). doi: 10.1093/femsle/fny096.


Transcriptional changes when Myxococcus xanthus preys on Escherichia coli suggest myxobacterial predators are constitutively toxic but regulate their feeding.

Livingstone PG, Millard AD, Swain MT, Whitworth DE.

Microb Genom. 2018 Jan 18. doi: 10.1099/mgen.0.000152. [Epub ahead of print]


Group Therapy or Mass Suicide? The Sharing of Cellular Damage Between Members of a Bacterial Community.

Whitworth DE.

Bioessays. 2017 Dec;39(12). doi: 10.1002/bies.201700178. Epub 2017 Nov 8. No abstract available.


Myxobacteria Are Able to Prey Broadly upon Clinically-Relevant Pathogens, Exhibiting a Prey Range Which Cannot Be Explained by Phylogeny.

Livingstone PG, Morphew RM, Whitworth DE.

Front Microbiol. 2017 Aug 22;8:1593. doi: 10.3389/fmicb.2017.01593. eCollection 2017.


The Myxobacterium Myxococcus xanthus Can Sense and Respond to the Quorum Signals Secreted by Potential Prey Organisms.

Lloyd DG, Whitworth DE.

Front Microbiol. 2017 Mar 14;8:439. doi: 10.3389/fmicb.2017.00439. eCollection 2017.


MetaPred2CS: a sequence-based meta-predictor for protein-protein interactions of prokaryotic two-component system proteins.

Kara A, Vickers M, Swain M, Whitworth DE, Fernandez-Fuentes N.

Bioinformatics. 2016 Nov 1;32(21):3339-3341. Epub 2016 Jul 4.


Can the Bacterial Community of a High Arctic Glacier Surface Escape Viral Control?

Rassner SM, Anesio AM, Girdwood SE, Hell K, Gokul JK, Whitworth DE, Edwards A.

Front Microbiol. 2016 Jun 21;7:956. doi: 10.3389/fmicb.2016.00956. eCollection 2016.


Recasting a traditional laboratory practical as a "Design-your-own protocol" to teach a universal research skill.

Whitworth DE.

Biochem Mol Biol Educ. 2016 Jul 8;44(4):377-80. doi: 10.1002/bmb.20948. Epub 2016 Feb 11.


Synergism Between Bacterial GAPDH and OMVs: Disparate Mechanisms but Co-Operative Action.

Whitworth DE, Morgan BH.

Front Microbiol. 2015 Nov 9;6:1231. doi: 10.3389/fmicb.2015.01231. eCollection 2015. No abstract available.


An off-the-shelf, authentic, and versatile undergraduate molecular biology practical course.

Whitworth DE.

Biochem Mol Biol Educ. 2015 Nov-Dec;43(6):434-40. doi: 10.1002/bmb.20893. Epub 2015 Oct 30.


Genome-wide analysis of myxobacterial two-component systems: genome relatedness and evolutionary changes.

Whitworth DE.

BMC Genomics. 2015 Oct 13;16:780. doi: 10.1186/s12864-015-2018-y.


Genome-wide prediction of prokaryotic two-component system networks using a sequence-based meta-predictor.

Kara A, Vickers M, Swain M, Whitworth DE, Fernandez-Fuentes N.

BMC Bioinformatics. 2015 Sep 18;16:297. doi: 10.1186/s12859-015-0741-7.


Composition of distinct sub-proteomes in Myxococcus xanthus: metabolic cost and amino acid availability.

Whitworth DE, Slade SE, Mironas A.

Amino Acids. 2015 Dec;47(12):2521-31. doi: 10.1007/s00726-015-2042-x. Epub 2015 Jul 11.


P2CS: updates of the prokaryotic two-component systems database.

Ortet P, Whitworth DE, Santaella C, Achouak W, Barakat M.

Nucleic Acids Res. 2015 Jan;43(Database issue):D536-41. doi: 10.1093/nar/gku968. Epub 2014 Oct 16.


The fist bump: a more hygienic alternative to the handshake.

Mela S, Whitworth DE.

Am J Infect Control. 2014 Aug;42(8):916-7. doi: 10.1016/j.ajic.2014.04.011.


P2RP: a Web-based framework for the identification and analysis of regulatory proteins in prokaryotic genomes.

Barakat M, Ortet P, Whitworth DE.

BMC Genomics. 2013 Apr 20;14:269. doi: 10.1186/1471-2164-14-269.


P2TF: a comprehensive resource for analysis of prokaryotic transcription factors.

Ortet P, De Luca G, Whitworth DE, Barakat M.

BMC Genomics. 2012 Nov 15;13:628. doi: 10.1186/1471-2164-13-628.

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