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Items: 1 to 20 of 47

1.

TORC1-mediated sensing of chaperone activity alters glucose metabolism and extends lifespan.

Perić M, Lovrić A, Šarić A, Musa M, Bou Dib P, Rudan M, Nikolić A, Sobočanec S, Mikecin AM, Dennerlein S, Milošević I, Vlahoviček K, Raimundo N, Kriško A.

Aging Cell. 2017 Oct;16(5):994-1005. doi: 10.1111/acel.12623. Epub 2017 Jun 14.

2.

Long terminal repeats power evolution of genes and gene expression programs in mammalian oocytes and zygotes.

Franke V, Ganesh S, Karlic R, Malik R, Pasulka J, Horvat F, Kuzman M, Fulka H, Cernohorska M, Urbanova J, Svobodova E, Ma J, Suzuki Y, Aoki F, Schultz RM, Vlahovicek K, Svoboda P.

Genome Res. 2017 Aug;27(8):1384-1394. doi: 10.1101/gr.216150.116. Epub 2017 May 18.

3.

Long non-coding RNA exchange during the oocyte-to-embryo transition in mice.

Karlic R, Ganesh S, Franke V, Svobodova E, Urbanova J, Suzuki Y, Aoki F, Vlahovicek K, Svoboda P.

DNA Res. 2017 Apr 1;24(2):219-220. doi: 10.1093/dnares/dsx008. No abstract available.

4.

Long non-coding RNA exchange during the oocyte-to-embryo transition in mice.

Karlic R, Ganesh S, Franke V, Svobodova E, Urbanova J, Suzuki Y, Aoki F, Vlahovicek K, Svoboda P.

DNA Res. 2017 Apr 1;24(2):129-141. doi: 10.1093/dnares/dsw058. Erratum in: DNA Res. 2017 Apr 1;24(2):219-220.

5.

Big Data, Evolution, and Metagenomes: Predicting Disease from Gut Microbiota Codon Usage Profiles.

Fabijanić M, Vlahoviček K.

Methods Mol Biol. 2016;1415:509-31. doi: 10.1007/978-1-4939-3572-7_26.

PMID:
27115650
6.

The first murine zygotic transcription is promiscuous and uncoupled from splicing and 3' processing.

Abe K, Yamamoto R, Franke V, Cao M, Suzuki Y, Suzuki MG, Vlahovicek K, Svoboda P, Schultz RM, Aoki F.

EMBO J. 2015 Jun 3;34(11):1523-37. doi: 10.15252/embj.201490648. Epub 2015 Apr 20.

7.

Cell-of-origin chromatin organization shapes the mutational landscape of cancer.

Polak P, Karlić R, Koren A, Thurman R, Sandstrom R, Lawrence M, Reynolds A, Rynes E, Vlahoviček K, Stamatoyannopoulos JA, Sunyaev SR.

Nature. 2015 Feb 19;518(7539):360-364. doi: 10.1038/nature14221.

8.

Genomation: a toolkit to summarize, annotate and visualize genomic intervals.

Akalin A, Franke V, Vlahoviček K, Mason CE, Schübeler D.

Bioinformatics. 2015 Apr 1;31(7):1127-9. doi: 10.1093/bioinformatics/btu775. Epub 2014 Nov 21.

PMID:
25417204
9.

Exonic splicing signals impose constraints upon the evolution of enzymatic activity.

Falanga A, Stojanović O, Kiffer-Moreira T, Pinto S, Millán JL, Vlahoviček K, Baralle M.

Nucleic Acids Res. 2014 May;42(9):5790-8. doi: 10.1093/nar/gku240. Epub 2014 Apr 1.

10.

Genome-wide analysis of the chromatin composition of histone H2A and H3 variants in mouse embryonic stem cells.

Yukawa M, Akiyama T, Franke V, Mise N, Isagawa T, Suzuki Y, Suzuki MG, Vlahovicek K, Abe K, Aburatani H, Aoki F.

PLoS One. 2014 Mar 21;9(3):e92689. doi: 10.1371/journal.pone.0092689. eCollection 2014.

11.

A retrotransposon-driven dicer isoform directs endogenous small interfering RNA production in mouse oocytes.

Flemr M, Malik R, Franke V, Nejepinska J, Sedlacek R, Vlahovicek K, Svoboda P.

Cell. 2013 Nov 7;155(4):807-16. doi: 10.1016/j.cell.2013.10.001.

12.

Environmental shaping of codon usage and functional adaptation across microbial communities.

Roller M, Lucić V, Nagy I, Perica T, Vlahovicek K.

Nucleic Acids Res. 2013 Oct;41(19):8842-52. doi: 10.1093/nar/gkt673. Epub 2013 Aug 5.

13.

Molecular analysis of HEXA gene in Argentinean patients affected with Tay-Sachs disease: possible common origin of the prevalent c.459+5A>G mutation.

Zampieri S, Montalvo A, Blanco M, Zanin I, Amartino H, Vlahovicek K, Szlago M, Schenone A, Pittis G, Bembi B, Dardis A.

Gene. 2012 May 15;499(2):262-5. doi: 10.1016/j.gene.2012.03.022. Epub 2012 Mar 13.

PMID:
22441121
14.

Prediction of interacting protein residues using sequence and structure data.

Franke V, Sikić M, Vlahoviček K.

Methods Mol Biol. 2012;819:233-51. doi: 10.1007/978-1-61779-465-0_16.

PMID:
22183541
15.

PRO-MINE: A bioinformatics repository and analytical tool for TARDBP mutations.

Pinto S, Vlahoviček K, Buratti E.

Hum Mutat. 2011 Jan;32(1):E1948-58. doi: 10.1002/humu.21393.

16.

Demosponge EST sequencing reveals a complex genetic toolkit of the simplest metazoans.

Harcet M, Roller M, Cetković H, Perina D, Wiens M, Müller WE, Vlahovicek K.

Mol Biol Evol. 2010 Dec;27(12):2747-56. doi: 10.1093/molbev/msq174. Epub 2010 Jul 9.

17.

Translational selection is ubiquitous in prokaryotes.

Supek F, Skunca N, Repar J, Vlahovicek K, Smuc T.

PLoS Genet. 2010 Jun 24;6(6):e1001004. doi: 10.1371/journal.pgen.1001004.

18.

Common aberrations from the normal human plasma N-glycan profile.

Pucic M, Pinto S, Novokmet M, Knezevic A, Gornik O, Polasek O, Vlahovicek K, Wang W, Rudd PM, Wright AF, Campbell H, Rudan I, Lauc G.

Glycobiology. 2010 Aug;20(8):970-5. doi: 10.1093/glycob/cwq052. Epub 2010 Apr 8.

PMID:
20378934
19.

Histone modification levels are predictive for gene expression.

Karlić R, Chung HR, Lasserre J, Vlahovicek K, Vingron M.

Proc Natl Acad Sci U S A. 2010 Feb 16;107(7):2926-31. doi: 10.1073/pnas.0909344107. Epub 2010 Feb 1.

20.

Prediction of protein-protein interaction sites in sequences and 3D structures by random forests.

Sikić M, Tomić S, Vlahovicek K.

PLoS Comput Biol. 2009 Jan;5(1):e1000278. doi: 10.1371/journal.pcbi.1000278. Epub 2009 Jan 30.

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