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Items: 1 to 20 of 93

1.

Crystal structure of native α-L-rhamnosidase from Aspergillus terreus.

Pachl P, Škerlová J, Šimčíková D, Kotik M, Křenková A, Mader P, Brynda J, Kapešová J, Křen V, Otwinowski Z, Řezáčová P.

Acta Crystallogr D Struct Biol. 2018 Nov 1;74(Pt 11):1078-1084. doi: 10.1107/S2059798318013049. Epub 2018 Oct 29.

PMID:
30387766
2.

The Bear Giant-Skipper genome suggests genetic adaptations to living inside yucca roots.

Cong Q, Li W, Borek D, Otwinowski Z, Grishin NV.

Mol Genet Genomics. 2018 Oct 6. doi: 10.1007/s00438-018-1494-6. [Epub ahead of print]

PMID:
30293092
3.

Real-space analysis of radiation-induced specific changes with independent component analysis.

Borek D, Bromberg R, Hattne J, Otwinowski Z.

J Synchrotron Radiat. 2018 Mar 1;25(Pt 2):451-467. doi: 10.1107/S1600577517018148. Epub 2018 Feb 22.

PMID:
29488925
4.

Crystal structure of native β-N-acetylhexosaminidase isolated from Aspergillus oryzae sheds light onto its substrate specificity, high stability, and regulation by propeptide.

Škerlová J, Bláha J, Pachl P, Hofbauerová K, Kukačka Z, Man P, Pompach P, Novák P, Otwinowski Z, Brynda J, Vaněk O, Řezáčová P.

FEBS J. 2018 Feb;285(3):580-598. doi: 10.1111/febs.14360. Epub 2017 Dec 30.

PMID:
29239122
5.

Complete Genome of Achalarus lyciades, The First Representative of the Eudaminae Subfamily of Skippers.

Shen J, Cong Q, Borek D, Otwinowski Z, Grishin NV.

Curr Genomics. 2017 Aug;18(4):366-374. doi: 10.2174/1389202918666170426113315.

6.

The first complete genomes of Metalmarks and the classification of butterfly families.

Cong Q, Shen J, Li W, Borek D, Otwinowski Z, Grishin NV.

Genomics. 2017 Oct;109(5-6):485-493. doi: 10.1016/j.ygeno.2017.07.006. Epub 2017 Jul 28.

7.

When COI barcodes deceive: complete genomes reveal introgression in hairstreaks.

Cong Q, Shen J, Borek D, Robbins RK, Opler PA, Otwinowski Z, Grishin NV.

Proc Biol Sci. 2017 Feb 8;284(1848). pii: 20161735. doi: 10.1098/rspb.2016.1735.

8.

Complete genome of Pieris rapae, a resilient alien, a cabbage pest, and a source of anti-cancer proteins.

Shen J, Cong Q, Kinch LN, Borek D, Otwinowski Z, Grishin NV.

F1000Res. 2016 Nov 3;5:2631. doi: 10.12688/f1000research.9765.1. eCollection 2016.

9.

Crystal structure of the cohesin loader Scc2 and insight into cohesinopathy.

Kikuchi S, Borek DM, Otwinowski Z, Tomchick DR, Yu H.

Proc Natl Acad Sci U S A. 2016 Nov 1;113(44):12444-12449. Epub 2016 Oct 18.

10.

Crystal structures of the human elongation factor eEFSec suggest a non-canonical mechanism for selenocysteine incorporation.

Dobosz-Bartoszek M, Pinkerton MH, Otwinowski Z, Chakravarthy S, Söll D, Copeland PR, Simonović M.

Nat Commun. 2016 Oct 6;7:12941. doi: 10.1038/ncomms12941.

11.

Phylogeny Reconstruction with Alignment-Free Method That Corrects for Horizontal Gene Transfer.

Bromberg R, Grishin NV, Otwinowski Z.

PLoS Comput Biol. 2016 Jun 23;12(6):e1004985. doi: 10.1371/journal.pcbi.1004985. eCollection 2016 Jun.

12.

Estimation of Uncertainties in the Global Distance Test (GDT_TS) for CASP Models.

Li W, Schaeffer RD, Otwinowski Z, Grishin NV.

PLoS One. 2016 May 5;11(5):e0154786. doi: 10.1371/journal.pone.0154786. eCollection 2016.

13.

Crystal structure of the human sterol transporter ABCG5/ABCG8.

Lee JY, Kinch LN, Borek DM, Wang J, Wang J, Urbatsch IL, Xie XS, Grishin NV, Cohen JC, Otwinowski Z, Hobbs HH, Rosenbaum DM.

Nature. 2016 May 26;533(7604):561-4. doi: 10.1038/nature17666. Epub 2016 May 4.

14.

Complete genomes of Hairstreak butterflies, their speciation, and nucleo-mitochondrial incongruence.

Cong Q, Shen J, Borek D, Robbins RK, Otwinowski Z, Grishin NV.

Sci Rep. 2016 Apr 28;6:24863. doi: 10.1038/srep24863.

15.

Taking a look at the calibration of a CCD detector with a fiber-optic taper.

Alkire RW, Rotella FJ, Duke NE, Otwinowski Z, Borek D.

J Appl Crystallogr. 2016 Feb 16;49(Pt 2):415-425. eCollection 2016 Apr 1.

16.

Speciation in Cloudless Sulphurs Gleaned from Complete Genomes.

Cong Q, Shen J, Warren AD, Borek D, Otwinowski Z, Grishin NV.

Genome Biol Evol. 2016 Mar 30;8(3):915-31. doi: 10.1093/gbe/evw045.

17.

Data publication with the structural biology data grid supports live analysis.

Meyer PA, Socias S, Key J, Ransey E, Tjon EC, Buschiazzo A, Lei M, Botka C, Withrow J, Neau D, Rajashankar K, Anderson KS, Baxter RH, Blacklow SC, Boggon TJ, Bonvin AM, Borek D, Brett TJ, Caflisch A, Chang CI, Chazin WJ, Corbett KD, Cosgrove MS, Crosson S, Dhe-Paganon S, Di Cera E, Drennan CL, Eck MJ, Eichman BF, Fan QR, Ferré-D'Amaré AR, Fromme JC, Garcia KC, Gaudet R, Gong P, Harrison SC, Heldwein EE, Jia Z, Keenan RJ, Kruse AC, Kvansakul M, McLellan JS, Modis Y, Nam Y, Otwinowski Z, Pai EF, Pereira PJ, Petosa C, Raman CS, Rapoport TA, Roll-Mecak A, Rosen MK, Rudenko G, Schlessinger J, Schwartz TU, Shamoo Y, Sondermann H, Tao YJ, Tolia NH, Tsodikov OV, Westover KD, Wu H, Foster I, Fraser JS, Maia FR, Gonen T, Kirchhausen T, Diederichs K, Crosas M, Sliz P.

Nat Commun. 2016 Mar 7;7:10882. doi: 10.1038/ncomms10882.

18.

Skipper genome sheds light on unique phenotypic traits and phylogeny.

Cong Q, Borek D, Otwinowski Z, Grishin NV.

BMC Genomics. 2015 Aug 27;16:639. doi: 10.1186/s12864-015-1846-0.

19.

Disruption of Wnt/β-Catenin Signaling and Telomeric Shortening Are Inextricable Consequences of Tankyrase Inhibition in Human Cells.

Kulak O, Chen H, Holohan B, Wu X, He H, Borek D, Otwinowski Z, Yamaguchi K, Garofalo LA, Ma Z, Wright W, Chen C, Shay JW, Zhang X, Lum L.

Mol Cell Biol. 2015 Jul;35(14):2425-35. doi: 10.1128/MCB.00392-15. Epub 2015 May 4.

20.

An Intrinsically Disordered Peptide from Ebola Virus VP35 Controls Viral RNA Synthesis by Modulating Nucleoprotein-RNA Interactions.

Leung DW, Borek D, Luthra P, Binning JM, Anantpadma M, Liu G, Harvey IB, Su Z, Endlich-Frazier A, Pan J, Shabman RS, Chiu W, Davey RA, Otwinowski Z, Basler CF, Amarasinghe GK.

Cell Rep. 2015 Apr 21;11(3):376-89. doi: 10.1016/j.celrep.2015.03.034. Epub 2015 Apr 9.

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