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Complete Genome Sequences of Four Microbacterium Strains Isolated from Metal- and Radionuclide-Rich Soils.

Ortet P, Gallois N, Long J, Zirah S, Berthomieu C, Armengaud J, Alpha-Bazin B, Barakat M, Chapon V.

Microbiol Resour Announc. 2019 Oct 17;8(42). pii: e00846-19. doi: 10.1128/MRA.00846-19.


Plant hosts control microbial denitrification activity.

Achouak W, Abrouk D, Guyonnet J, Barakat M, Ortet P, Simon L, Lerondelle C, Heulin T, Haichar FEZ.

FEMS Microbiol Ecol. 2019 Mar 1;95(3). pii: fiz021. doi: 10.1093/femsec/fiz021.


Plant Nutrient Resource Use Strategies Shape Active Rhizosphere Microbiota Through Root Exudation.

Guyonnet JP, Guillemet M, Dubost A, Simon L, Ortet P, Barakat M, Heulin T, Achouak W, Haichar FEZ.

Front Plant Sci. 2018 Nov 23;9:1662. doi: 10.3389/fpls.2018.01662. eCollection 2018.


Proteomics data for characterizing Microbacterium oleivorans A9, an uranium-tolerant actinobacterium isolated near the Chernobyl nuclear power plant.

Gallois N, Piette L, Ortet P, Bakarat M, Long J, Berthomieu C, Armengaud J, Chapon V, Alpha-Bazin B.

Data Brief. 2018 Oct 30;21:1125-1129. doi: 10.1016/j.dib.2018.10.136. eCollection 2018 Dec.


Two New Secreted Proteases Generate a Casein-Derived Antimicrobial Peptide in Bacillus cereus Food Born Isolate Leading to Bacterial Competition in Milk.

Ouertani A, Chaabouni I, Mosbah A, Long J, Barakat M, Mansuelle P, Mghirbi O, Najjari A, Ouzari HI, Masmoudi AS, Maresca M, Ortet P, Gigmes D, Mabrouk K, Cherif A.

Front Microbiol. 2018 Jun 4;9:1148. doi: 10.3389/fmicb.2018.01148. eCollection 2018.


Sequencing, De Novo Assembly, and Annotation of the Complete Genome of a New Thraustochytrid Species, Strain CCAP_4062/3.

Seddiki K, Godart F, Aiese Cigliano R, Sanseverino W, Barakat M, Ortet P, Rébeillé F, Maréchal E, Cagnac O, Amato A.

Genome Announc. 2018 Mar 15;6(11). pii: e01335-17. doi: 10.1128/genomeA.01335-17.


Proteogenomic insights into uranium tolerance of a Chernobyl's Microbacterium bacterial isolate.

Gallois N, Alpha-Bazin B, Ortet P, Barakat M, Piette L, Long J, Berthomieu C, Armengaud J, Chapon V.

J Proteomics. 2018 Apr 15;177:148-157. doi: 10.1016/j.jprot.2017.11.021. Epub 2017 Dec 6.


Modifications at K31 on the lateral surface of histone H4 contribute to genome structure and expression in apicomplexan parasites.

Sindikubwabo F, Ding S, Hussain T, Ortet P, Barakat M, Baumgarten S, Cannella D, Palencia A, Bougdour A, Belmudes L, Couté Y, Tardieux I, Botté CY, Scherf A, Hakimi MA.

Elife. 2017 Nov 4;6. pii: e29391. doi: 10.7554/eLife.29391.


Geometagenomics illuminates the impact of agriculture on the distribution and prevalence of plant viruses at the ecosystem scale.

Bernardo P, Charles-Dominique T, Barakat M, Ortet P, Fernandez E, Filloux D, Hartnady P, Rebelo TA, Cousins SR, Mesleard F, Cohez D, Yavercovski N, Varsani A, Harkins GW, Peterschmitt M, Malmstrom CM, Martin DP, Roumagnac P.

ISME J. 2018 Jan;12(1):173-184. doi: 10.1038/ismej.2017.155. Epub 2017 Oct 20.


Pearl Millet Genetic Traits Shape Rhizobacterial Diversity and Modulate Rhizosphere Aggregation.

Ndour PMS, Gueye M, Barakat M, Ortet P, Bertrand-Huleux M, Pablo AL, Dezette D, Chapuis-Lardy L, Assigbetsé K, Kane NA, Vigouroux Y, Achouak W, Ndoye I, Heulin T, Cournac L.

Front Plant Sci. 2017 Jul 27;8:1288. doi: 10.3389/fpls.2017.01288. eCollection 2017.


Evidence that Soil Properties and Organic Coating Drive the Phytoavailability of Cerium Oxide Nanoparticles.

Layet C, Auffan M, Santaella C, Chevassus-Rosset C, Montes M, Ortet P, Barakat M, Collin B, Legros S, Bravin MN, Angeletti B, Kieffer I, Proux O, Hazemann JL, Doelsch E.

Environ Sci Technol. 2017 Sep 5;51(17):9756-9764. doi: 10.1021/acs.est.7b02397. Epub 2017 Aug 18.


Soil prokaryotic communities in Chernobyl waste disposal trench T22 are modulated by organic matter and radionuclide contamination.

Theodorakopoulos N, Février L, Barakat M, Ortet P, Christen R, Piette L, Levchuk S, Beaugelin-Seiller K, Sergeant C, Berthomieu C, Chapon V.

FEMS Microbiol Ecol. 2017 Aug 1;93(8). doi: 10.1093/femsec/fix079.


Draft Genome Sequence of Microbacterium oleivorans Strain A9, a Bacterium Isolated from Chernobyl Radionuclide-Contaminated Soil.

Ortet P, Gallois N, Piette L, Long J, Berthomieu C, Armengaud J, Barakat M, Chapon V.

Genome Announc. 2017 Apr 6;5(14). pii: e00092-17. doi: 10.1128/genomeA.00092-17.


Design Defines the Effects of Nanoceria at a Low Dose on Soil Microbiota and the Potentiation of Impacts by the Canola Plant.

Hamidat M, Barakat M, Ortet P, Chanéac C, Rose J, Bottero JY, Heulin T, Achouak W, Santaella C.

Environ Sci Technol. 2016 Jul 5;50(13):6892-901. doi: 10.1021/acs.est.6b01056. Epub 2016 Jun 14.


Isolation and identification of Pseudomonas syringae facilitated by a PCR targeting the whole P. syringae group.

Guilbaud C, Morris CE, Barakat M, Ortet P, Berge O.

FEMS Microbiol Ecol. 2016 Jan;92(1). pii: fiv146. doi: 10.1093/femsec/fiv146. Epub 2015 Nov 25.


Microbiote shift in the Medicago sativa rhizosphere in response to cyanotoxins extract exposure.

El Khalloufi F, Oufdou K, Bertrand M, Lahrouni M, Oudra B, Ortet P, Barakat M, Heulin T, Achouak W.

Sci Total Environ. 2016 Jan 1;539:135-142. doi: 10.1016/j.scitotenv.2015.08.127. Epub 2015 Sep 8.


P2CS: updates of the prokaryotic two-component systems database.

Ortet P, Whitworth DE, Santaella C, Achouak W, Barakat M.

Nucleic Acids Res. 2015 Jan;43(Database issue):D536-41. doi: 10.1093/nar/gku968. Epub 2014 Oct 16.


P2RP: a Web-based framework for the identification and analysis of regulatory proteins in prokaryotic genomes.

Barakat M, Ortet P, Whitworth DE.

BMC Genomics. 2013 Apr 20;14:269. doi: 10.1186/1471-2164-14-269.


Host cell subversion by Toxoplasma GRA16, an exported dense granule protein that targets the host cell nucleus and alters gene expression.

Bougdour A, Durandau E, Brenier-Pinchart MP, Ortet P, Barakat M, Kieffer S, Curt-Varesano A, Curt-Bertini RL, Bastien O, Coute Y, Pelloux H, Hakimi MA.

Cell Host Microbe. 2013 Apr 17;13(4):489-500. doi: 10.1016/j.chom.2013.03.002.


Reversible oxygen-tolerant hydrogenase carried by free-living N2-fixing bacteria isolated from the rhizospheres of rice, maize, and wheat.

Roumagnac P, Richaud P, Barakat M, Ortet P, Roncato MA, Heulin T, Peltier G, Achouak W, Cournac L.

Microbiologyopen. 2012 Dec;1(4):349-61. doi: 10.1002/mbo3.37. Epub 2012 Sep 12.

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