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Items: 1 to 20 of 212

1.

Modeling protein assemblies: Critical Assessment of Predicted Interactions (CAPRI) 15 years hence.: 6TH CAPRI evaluation meeting April 17-19 Tel-Aviv, Israel.

Wodak SJ, Janin J.

Proteins. 2017 Mar;85(3):357-358. doi: 10.1002/prot.25233. No abstract available.

PMID:
28019680
2.

Changes in protein structure at the interface accompanying complex formation.

Chakravarty D, Janin J, Robert CH, Chakrabarti P.

IUCrJ. 2015 Oct 16;2(Pt 6):643-52. doi: 10.1107/S2052252515015250. eCollection 2015 Nov 1.

3.

A minimal model of protein-protein binding affinities.

Janin J.

Protein Sci. 2014 Dec;23(12):1813-7. doi: 10.1002/pro.2560. Epub 2014 Oct 25.

4.

Protein-protein interactions.

Janin J, Bonvin AM.

Curr Opin Struct Biol. 2013 Dec;23(6):859-61. doi: 10.1016/j.sbi.2013.10.003. Epub 2013 Nov 12. No abstract available.

PMID:
24239089
5.

Structural templates for modeling homodimers.

Kundrotas PJ, Vakser IA, Janin J.

Protein Sci. 2013 Nov;22(11):1655-63. doi: 10.1002/pro.2361. Epub 2013 Sep 20.

6.

Reassessing buried surface areas in protein-protein complexes.

Chakravarty D, Guharoy M, Robert CH, Chakrabarti P, Janin J.

Protein Sci. 2013 Oct;22(10):1453-7. doi: 10.1002/pro.2330. Epub 2013 Sep 4.

7.

The targets of CAPRI rounds 20-27.

Janin J.

Proteins. 2013 Dec;81(12):2075-81. doi: 10.1002/prot.24375.

PMID:
23900782
8.

Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions.

Moretti R, Fleishman SJ, Agius R, Torchala M, Bates PA, Kastritis PL, Rodrigues JP, Trellet M, Bonvin AM, Cui M, Rooman M, Gillis D, Dehouck Y, Moal I, Romero-Durana M, Perez-Cano L, Pallara C, Jimenez B, Fernandez-Recio J, Flores S, Pacella M, Praneeth Kilambi K, Gray JJ, Popov P, Grudinin S, Esquivel-Rodríguez J, Kihara D, Zhao N, Korkin D, Zhu X, Demerdash ON, Mitchell JC, Kanamori E, Tsuchiya Y, Nakamura H, Lee H, Park H, Seok C, Sarmiento J, Liang S, Teraguchi S, Standley DM, Shimoyama H, Terashi G, Takeda-Shitaka M, Iwadate M, Umeyama H, Beglov D, Hall DR, Kozakov D, Vajda S, Pierce BG, Hwang H, Vreven T, Weng Z, Huang Y, Li H, Yang X, Ji X, Liu S, Xiao Y, Zacharias M, Qin S, Zhou HX, Huang SY, Zou X, Velankar S, Janin J, Wodak SJ, Baker D.

Proteins. 2013 Nov;81(11):1980-7. doi: 10.1002/prot.24356. Epub 2013 Aug 23.

9.

Protein flexibility, not disorder, is intrinsic to molecular recognition.

Janin J, Sternberg MJ.

F1000 Biol Rep. 2013;5:2. doi: 10.3410/B5-2. Epub 2013 Jan 11.

10.

Templates are available to model nearly all complexes of structurally characterized proteins.

Kundrotas PJ, Zhu Z, Janin J, Vakser IA.

Proc Natl Acad Sci U S A. 2012 Jun 12;109(24):9438-41. doi: 10.1073/pnas.1200678109. Epub 2012 May 29.

11.

Community-wide assessment of protein-interface modeling suggests improvements to design methodology.

Fleishman SJ, Whitehead TA, Strauch EM, Corn JE, Qin S, Zhou HX, Mitchell JC, Demerdash ON, Takeda-Shitaka M, Terashi G, Moal IH, Li X, Bates PA, Zacharias M, Park H, Ko JS, Lee H, Seok C, Bourquard T, Bernauer J, Poupon A, Azé J, Soner S, Ovali SK, Ozbek P, Tal NB, Haliloglu T, Hwang H, Vreven T, Pierce BG, Weng Z, Pérez-Cano L, Pons C, Fernández-Recio J, Jiang F, Yang F, Gong X, Cao L, Xu X, Liu B, Wang P, Li C, Wang C, Robert CH, Guharoy M, Liu S, Huang Y, Li L, Guo D, Chen Y, Xiao Y, London N, Itzhaki Z, Schueler-Furman O, Inbar Y, Potapov V, Cohen M, Schreiber G, Tsuchiya Y, Kanamori E, Standley DM, Nakamura H, Kinoshita K, Driggers CM, Hall RG, Morgan JL, Hsu VL, Zhan J, Yang Y, Zhou Y, Kastritis PL, Bonvin AM, Zhang W, Camacho CJ, Kilambi KP, Sircar A, Gray JJ, Ohue M, Uchikoga N, Matsuzaki Y, Ishida T, Akiyama Y, Khashan R, Bush S, Fouches D, Tropsha A, Esquivel-Rodríguez J, Kihara D, Stranges PB, Jacak R, Kuhlman B, Huang SY, Zou X, Wodak SJ, Janin J, Baker D.

J Mol Biol. 2011 Nov 25;414(2):289-302. doi: 10.1016/j.jmb.2011.09.031. Epub 2011 Sep 29.

12.

A survey of hemoglobin quaternary structures.

Dey S, Chakrabarti P, Janin J.

Proteins. 2011 Oct;79(10):2861-70. doi: 10.1002/prot.23112. Epub 2011 Aug 22.

PMID:
21905111
13.

A structure-based benchmark for protein-protein binding affinity.

Kastritis PL, Moal IH, Hwang H, Weng Z, Bates PA, Bonvin AM, Janin J.

Protein Sci. 2011 Mar;20(3):482-91. doi: 10.1002/pro.580. Epub 2011 Feb 16.

14.

Protein-protein docking benchmark version 4.0.

Hwang H, Vreven T, Janin J, Weng Z.

Proteins. 2010 Nov 15;78(15):3111-4. doi: 10.1002/prot.22830.

15.

Side-chain rotamer transitions at protein-protein interfaces.

Guharoy M, Janin J, Robert CH.

Proteins. 2010 Nov 15;78(15):3219-25. doi: 10.1002/prot.22821.

PMID:
20737439
16.

Protein-protein docking tested in blind predictions: the CAPRI experiment.

Janin J.

Mol Biosyst. 2010 Dec;6(12):2351-62. doi: 10.1039/c005060c. Epub 2010 Aug 19. Review.

PMID:
20725658
17.

The targets of CAPRI Rounds 13-19.

Janin J.

Proteins. 2010 Nov 15;78(15):3067-72. doi: 10.1002/prot.22774.

PMID:
20589643
18.

Human and viral nucleoside/nucleotide kinases involved in antiviral drug activation: structural and catalytic properties.

Deville-Bonne D, El Amri C, Meyer P, Chen Y, Agrofoglio LA, Janin J.

Antiviral Res. 2010 Apr;86(1):101-20. doi: 10.1016/j.antiviral.2010.02.001. Review.

PMID:
20417378
19.

Analysis and prediction of protein quaternary structure.

Poupon A, Janin J.

Methods Mol Biol. 2010;609:349-64. doi: 10.1007/978-1-60327-241-4_20.

PMID:
20221929
20.

Nucleoside diphosphate kinase and the activation of antiviral phosphonate analogs of nucleotides: binding mode and phosphorylation of tenofovir derivatives.

Koch K, Chen Y, Feng JY, Borroto-Esoda K, Deville-Bonne D, Gallois-Montbrun S, Janin J, Moréra S.

Nucleosides Nucleotides Nucleic Acids. 2009 Aug;28(8):776-92. doi: 10.1080/15257770903155899. Erratum in: Nucleosides Nucleotides Nucleic Acids. 2009 Oct;28(10):987. Gallois-Montbrun, Sarah [added].

PMID:
20183617

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