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Items: 1 to 20 of 72


OHMI: the ontology of host-microbiome interactions.

He Y, Wang H, Zheng J, Beiting DP, Masci AM, Yu H, Liu K, Wu J, Curtis JL, Smith B, Alekseyenko AV, Obeid JS.

J Biomed Semantics. 2019 Dec 30;10(1):25. doi: 10.1186/s13326-019-0217-1.


VIO: ontology classification and study of vaccine responses given various experimental and analytical conditions.

Ong E, Sun P, Berke K, Zheng J, Wu G, He Y.

BMC Bioinformatics. 2019 Dec 23;20(Suppl 21):704. doi: 10.1186/s12859-019-3194-6.


A 2018 workshop: vaccine and drug ontology studies (VDOS 2018).

Hur J, Tao C, He Y.

BMC Bioinformatics. 2019 Dec 23;20(Suppl 21):705. doi: 10.1186/s12859-019-3191-9.


OntoPlot: A Novel Visualisation for Non-hierarchical Associations in Large Ontologies.

Yang Y, Wybrow M, Li YF, Czauderna T, He Y.

IEEE Trans Vis Comput Graph. 2020 Jan;26(1):1140-1150. doi: 10.1109/TVCG.2019.2934557. Epub 2019 Aug 22.


Architecture and usability of OntoKeeper, an ontology evaluation tool.

Amith M, Manion F, Liang C, Harris M, Wang D, He Y, Tao C.

BMC Med Inform Decis Mak. 2019 Aug 8;19(Suppl 4):152. doi: 10.1186/s12911-019-0859-z.


OSCI: standardized stem cell ontology representation and use cases for stem cell investigation.

He Y, Duncan WD, Cooper DJ, Hansen J, Iyengar R, Ong E, Walker K, Tibi O, Smith S, Serra LM, Zheng J, Sarntivijai S, Schürer S, O'Shea KS, Diehl AD.

BMC Bioinformatics. 2019 Apr 25;20(Suppl 5):180. doi: 10.1186/s12859-019-2723-7.


Cells in ExperimentaL Life Sciences (CELLS-2018): capturing the knowledge of normal and diseased cells with ontologies.

Sarntivijai S, He Y, Diehl AD.

BMC Bioinformatics. 2019 Apr 25;20(Suppl 5):183. doi: 10.1186/s12859-019-2721-9.


The cell line ontology-based representation, integration and analysis of cell lines used in China.

Pan H, Bian X, Yang S, He Y, Yang X, Liu Y.

BMC Bioinformatics. 2019 Apr 25;20(Suppl 5):179. doi: 10.1186/s12859-019-2724-6.


ODAE: Ontology-based systematic representation and analysis of drug adverse events and its usage in study of adverse events given different patient age and disease conditions.

Yu H, Nysak S, Garg N, Ong E, Ye X, Zhang X, He Y.

BMC Bioinformatics. 2019 May 1;20(Suppl 7):199. doi: 10.1186/s12859-019-2729-1.


Victors: a web-based knowledge base of virulence factors in human and animal pathogens.

Sayers S, Li L, Ong E, Deng S, Fu G, Lin Y, Yang B, Zhang S, Fa Z, Zhao B, Xiang Z, Li Y, Zhao XM, Olszewski MA, Chen L, He Y.

Nucleic Acids Res. 2019 Jan 8;47(D1):D693-D700. doi: 10.1093/nar/gky999.


Ontology-based literature mining and class effect analysis of adverse drug reactions associated with neuropathy-inducing drugs.

Hur J, Özgür A, He Y.

J Biomed Semantics. 2018 Jun 7;9(1):17. doi: 10.1186/s13326-018-0185-x.


Ontology-Based Meta-Analysis of Animal and Human Adverse Events Associated With Licensed Brucellosis Vaccines.

Xie J, Wang J, Li Z, Wang W, Pang Y, He Y.

Front Pharmacol. 2018 May 15;9:503. doi: 10.3389/fphar.2018.00503. eCollection 2018.


The eXtensible ontology development (XOD) principles and tool implementation to support ontology interoperability.

He Y, Xiang Z, Zheng J, Lin Y, Overton JA, Ong E.

J Biomed Semantics. 2018 Jan 12;9(1):3. doi: 10.1186/s13326-017-0169-2. Review.


Ontological representation, integration, and analysis of LINCS cell line cells and their cellular responses.

Ong E, Xie J, Ni Z, Liu Q, Sarntivijai S, Lin Y, Cooper D, Terryn R, Stathias V, Chung C, Schürer S, He Y.

BMC Bioinformatics. 2017 Dec 21;18(Suppl 17):556. doi: 10.1186/s12859-017-1981-5.


Ontology-based systematic representation and analysis of traditional Chinese drugs against rheumatism.

Liu Q, Wang J, Zhu Y, He Y.

BMC Syst Biol. 2017 Dec 21;11(Suppl 7):130. doi: 10.1186/s12918-017-0510-5.


Cells in experimental life sciences - challenges and solution to the rapid evolution of knowledge.

Sarntivijai S, Diehl AD, He Y.

BMC Bioinformatics. 2017 Dec 21;18(Suppl 17):560. doi: 10.1186/s12859-017-1976-2.


Comparison, alignment, and synchronization of cell line information between CLO and EFO.

Ong E, Sarntivijai S, Jupp S, Parkinson H, He Y.

BMC Bioinformatics. 2017 Dec 21;18(Suppl 17):557. doi: 10.1186/s12859-017-1979-z.


Identification of New Features from Known Bacterial Protective Vaccine Antigens Enhances Rational Vaccine Design.

Ong E, Wong MU, He Y.

Front Immunol. 2017 Oct 26;8:1382. doi: 10.3389/fimmu.2017.01382. eCollection 2017.

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