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Items: 1 to 20 of 80

1.

DeepPhos: prediction of protein phosphorylation sites with deep learning.

Luo F, Wang M, Liu Y, Zhao XM, Li A.

Bioinformatics. 2019 Jan 2. doi: 10.1093/bioinformatics/bty1051. [Epub ahead of print]

PMID:
30601936
2.

Victors: a web-based knowledge base of virulence factors in human and animal pathogens.

Sayers S, Li L, Ong E, Deng S, Fu G, Lin Y, Yang B, Zhang S, Fa Z, Zhao B, Xiang Z, Li Y, Zhao XM, Olszewski MA, Chen L, He Y.

Nucleic Acids Res. 2019 Jan 8;47(D1):D693-D700. doi: 10.1093/nar/gky999.

3.

Joint Learning of Multiple Differential Networks With Latent Variables.

Ou-Yang L, Zhang XF, Zhao XM, Wang DD, Wang FL, Lei B, Yan H.

IEEE Trans Cybern. 2018 Jul 6. doi: 10.1109/TCYB.2018.2845838. [Epub ahead of print]

PMID:
29994625
4.

DrPOCS: Drug Repositioning Based on Projection Onto Convex Sets.

Wang YY, Cui C, Qi L, Yan H, Zhao XM.

IEEE/ACM Trans Comput Biol Bioinform. 2019 Jan-Feb;16(1):154-162. doi: 10.1109/TCBB.2018.2830384. Epub 2018 Apr 26.

PMID:
29993698
5.

HISP: a hybrid intelligent approach for identifying directed signaling pathways.

Zhao XM, Li S.

J Mol Cell Biol. 2017 Dec 1;9(6):453-462. doi: 10.1093/jmcb/mjx054.

PMID:
29281081
6.

Predicting new indications of compounds with a network pharmacology approach: Liuwei Dihuang Wan as a case study.

Wang YY, Bai H, Zhang RZ, Yan H, Ning K, Zhao XM.

Oncotarget. 2017 Sep 30;8(55):93957-93968. doi: 10.18632/oncotarget.21398. eCollection 2017 Nov 7.

7.

MVP: a microbe-phage interaction database.

Gao NL, Zhang C, Zhang Z, Hu S, Lercher MJ, Zhao XM, Bork P, Liu Z, Chen WH.

Nucleic Acids Res. 2018 Jan 4;46(D1):D700-D707. doi: 10.1093/nar/gkx1124.

8.

EmDL: Extracting miRNA-Drug Interactions from Literature.

Xie W, Yan H, Zhao XM.

IEEE/ACM Trans Comput Biol Bioinform. 2017 Jul 6. doi: 10.1109/TCBB.2017.2723394. [Epub ahead of print]

PMID:
28692985
9.

Conversion Discriminative Analysis on Mild Cognitive Impairment Using Multiple Cortical Features from MR Images.

Guo S, Lai C, Wu C, Cen G; Alzheimer's Disease Neuroimaging Initiative.

Front Aging Neurosci. 2017 May 18;9:146. doi: 10.3389/fnagi.2017.00146. eCollection 2017. Erratum in: Front Aging Neurosci. 2017 Sep 05;9:293.

10.

mTD: A database of microRNAs affecting therapeutic effects of drugs.

Chen X, Xie WB, Xiao PP, Zhao XM, Yan H.

J Genet Genomics. 2017 May 20;44(5):269-271. doi: 10.1016/j.jgg.2017.04.003. Epub 2017 May 3. No abstract available.

PMID:
28529075
11.

CSTEA: a webserver for the Cell State Transition Expression Atlas.

Zhu G, Yang H, Chen X, Wu J, Zhang Y, Zhao XM.

Nucleic Acids Res. 2017 Jul 3;45(W1):W103-W108. doi: 10.1093/nar/gkx402.

12.

GEAR: A database of Genomic Elements Associated with drug Resistance.

Wang YY, Chen WH, Xiao PP, Xie WB, Luo Q, Bork P, Zhao XM.

Sci Rep. 2017 Mar 15;7:44085. doi: 10.1038/srep44085.

13.

PhosD: inferring kinase-substrate interactions based on protein domains.

Qin GM, Li RY, Zhao XM.

Bioinformatics. 2017 Apr 15;33(8):1197-1204. doi: 10.1093/bioinformatics/btw792.

PMID:
28031187
14.

OGEE v2: an update of the online gene essentiality database with special focus on differentially essential genes in human cancer cell lines.

Chen WH, Lu G, Chen X, Zhao XM, Bork P.

Nucleic Acids Res. 2017 Jan 4;45(D1):D940-D944. doi: 10.1093/nar/gkw1013. Epub 2016 Oct 30.

15.

Differential network analysis from cross-platform gene expression data.

Zhang XF, Ou-Yang L, Zhao XM, Yan H.

Sci Rep. 2016 Sep 28;6:34112. doi: 10.1038/srep34112.

16.

Integrative analysis of mutational and transcriptional profiles reveals driver mutations of metastatic breast cancers.

Lee JH, Zhao XM, Yoon I, Lee JY, Kwon NH, Wang YY, Lee KM, Lee MJ, Kim J, Moon HG, In Y, Hao JK, Park KM, Noh DY, Han W, Kim S.

Cell Discov. 2016 Aug 30;2:16025. doi: 10.1038/celldisc.2016.25. eCollection 2016.

17.

A Survey on Computational Approaches to Predicting Adverse Drug Reactions.

Chen YG, Wang YY, Zhao XM.

Curr Top Med Chem. 2016;16(30):3629-3635.

PMID:
27334199
18.

PCID: A Novel Approach for Predicting Disease Comorbidity by Integrating Multi-Scale Data.

He F, Zhu G, Wang YY, Zhao XM, Huang DS.

IEEE/ACM Trans Comput Biol Bioinform. 2017 May-Jun;14(3):678-686. doi: 10.1109/TCBB.2016.2550443. Epub 2016 Apr 5.

PMID:
27076462
19.

The exploration of network motifs as potential drug targets from post-translational regulatory networks.

Zhang XD, Song J, Bork P, Zhao XM.

Sci Rep. 2016 Feb 8;6:20558. doi: 10.1038/srep20558.

20.

Identifying Disease Associated miRNAs Based on Protein Domains.

Qin GM, Li RY, Zhao XM.

IEEE/ACM Trans Comput Biol Bioinform. 2016 Nov-Dec;13(6):1027-1035. doi: 10.1109/TCBB.2016.2515608. Epub 2016 Jan 25.

PMID:
26829801

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