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Structure-based design and application of an engineered glutathione transferase for the development of an optical biosensor for pesticides determination.

Chronopoulou EG, Vlachakis D, Papageorgiou AC, Ataya FS, Labrou NE.

Biochim Biophys Acta Gen Subj. 2018 Dec 24;1863(3):565-576. doi: 10.1016/j.bbagen.2018.12.004. [Epub ahead of print]


Introducing Thetis: a comprehensive suite for event detection in molecular dynamics.

Picasi E, Tartas A, Megalooikonomou V, Vlachakis D.

J Mol Biochem. 2018;7(2):71-77. Epub 2018 Oct 3.


Insights into the Influence of Specific Splicing Events on the Structural Organization of LRRK2.

Vlachakis D, Labrou NE, Iliopoulos C, Hardy J, Lewis PA, Rideout H, Trabzuni D.

Int J Mol Sci. 2018 Sep 16;19(9). pii: E2784. doi: 10.3390/ijms19092784.


Carcinogenic Pesticide Control via Hijacking Endosymbiosis; The Paradigm of DSB-A from Wolbachia pipientis for the Management of Otiorhynchus singularis.

Kostaropoulos T, Papageorgiou L, Champeris Tsaniras S, Vlachakis D, Eliopoulos E.

In Vivo. 2018 Sep-Oct;32(5):1051-1062. doi: 10.21873/invivo.11346.


Delineation of the functional and structural properties of the glutathione transferase family from the plant pathogen Erwinia carotovora.

Theoharaki C, Chronopoulou E, Vlachakis D, Ataya FS, Giannopoulos P, Maurikou S, Skopelitou K, Papageorgiou AC, Labrou NE.

Funct Integr Genomics. 2018 Jun 25. doi: 10.1007/s10142-018-0618-8. [Epub ahead of print]


Human Emotions on the Onset of Cardiovascular and Small Vessel Related Diseases.

Vlachakis C, Dragoumani K, Raftopoulou S, Mantaiou M, Papageorgiou L, Champeris Tsaniras S, Megalooikonomou V, Vlachakis D.

In Vivo. 2018 Jul-Aug;32(4):859-870. doi: 10.21873/invivo.11320.


Genomic big data hitting the storage bottleneck.

Papageorgiou L, Eleni P, Raftopoulou S, Mantaiou M, Megalooikonomou V, Vlachakis D.

EMBnet J. 2018;24. pii: e910. Epub 2018 Apr 19.


EnzyNet: enzyme classification using 3D convolutional neural networks on spatial representation.

Amidi A, Amidi S, Vlachakis D, Megalooikonomou V, Paragios N, Zacharaki EI.

PeerJ. 2018 May 4;6:e4750. doi: 10.7717/peerj.4750. eCollection 2018.


A motif within the armadillo repeat of Parkinson's-linked LRRK2 interacts with FADD to hijack the extrinsic death pathway.

Antoniou N, Vlachakis D, Memou A, Leandrou E, Valkimadi PE, Melachroinou K, Re DB, Przedborski S, Dauer WT, Stefanis L, Rideout HJ.

Sci Rep. 2018 Feb 22;8(1):3455. doi: 10.1038/s41598-018-21931-8.


Insights into the molecular mechanisms of stress and inflammation in ageing and frailty of the elderly.

Vlachakis D, Zacharaki EI, Tsiamaki E, Koulouri M, Raftopoulou S, Papageorgiou L, Chrousos GP, Ellul J, Megalooikonomou V.

J Mol Biochem. 2017;6:41-44. Epub 2017 Dec 10.


HCV genetics and genotypes dictate future antiviral strategies.

Papageorgiou L, Vlachakis C, Dragoumani K, Raftopoulou S, Brouzas D, Nicolaides NC, Chrousos GP, Charmandari E, Megalooikonomou V, Vlachakis D.

J Mol Biochem. 2017;6:33-40. Epub 2017 Dec 10.


Structure-based design and application of a nucleotide coenzyme mimetic ligand: Application to the affinity purification of nucleotide dependent enzymes.

Marinou M, Platis D, Ataya FS, Chronopoulou E, Vlachakis D, Labrou NE.

J Chromatogr A. 2018 Feb 2;1535:88-100. doi: 10.1016/j.chroma.2018.01.009. Epub 2018 Jan 3.


Automatic single- and multi-label enzymatic function prediction by machine learning.

Amidi S, Amidi A, Vlachakis D, Paragios N, Zacharaki EI.

PeerJ. 2017 Mar 29;5:e3095. doi: 10.7717/peerj.3095. eCollection 2017.


Genetic and structural study of DNA-directed RNA polymerase II of Trypanosoma brucei, towards the designing of novel antiparasitic agents.

Papageorgiou L, Megalooikonomou V, Vlachakis D.

PeerJ. 2017 Mar 1;5:e3061. doi: 10.7717/peerj.3061. eCollection 2017.


Functional Toll-Like Receptor 9 Expression and CXCR3 Ligand Release in Pulmonary Sarcoidosis.

Schnerch J, Prasse A, Vlachakis D, Schuchardt KL, Pechkovsky DV, Goldmann T, Gaede KI, Müller-Quernheim J, Zissel G.

Am J Respir Cell Mol Biol. 2016 Nov;55(5):749-757.


Functional characterization of two novel germline mutations of the KCNJ5 gene in hypertensive patients without primary aldosteronism but with ACTH-dependent aldosterone hypersecretion.

Sertedaki A, Markou A, Vlachakis D, Kossida S, Campanac E, Hoffman DA, Sierra ML, Xekouki P, Stratakis CA, Kaltsas G, Piaditis GP, Chrousos GP, Charmandari E.

Clin Endocrinol (Oxf). 2016 Dec;85(6):845-851. doi: 10.1111/cen.13132. Epub 2016 Jul 12.


Erratum to: Structuprint: a scalable and extensible tool for two-dimensional representation of protein surfaces.

Kontopoulos DG, Vlachakis D, Tsiliki G, Kossida S.

BMC Struct Biol. 2016 Mar 11;16:6. doi: 10.1186/s12900-016-0057-5. No abstract available.


Structuprint: a scalable and extensible tool for two-dimensional representation of protein surfaces.

Kontopoulos DG, Vlachakis D, Tsiliki G, Kossida S.

BMC Struct Biol. 2016 Feb 24;16:4. doi: 10.1186/s12900-016-0055-7. Erratum in: BMC Struct Biol. 2016;16:6.


An updated evolutionary study of Flaviviridae NS3 helicase and NS5 RNA-dependent RNA polymerase reveals novel invariable motifs as potential pharmacological targets.

Papageorgiou L, Loukatou S, Sofia K, Maroulis D, Vlachakis D.

Mol Biosyst. 2016 Jun 21;12(7):2080-93. doi: 10.1039/c5mb00706b.


Antibodies as stratagems against cancer.

Papageorgiou L, Cuong NT, Vlachakis D.

Mol Biosyst. 2016 Jun 21;12(7):2047-55. doi: 10.1039/c5mb00699f. Review.


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