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Items: 1 to 20 of 462

1.

Single molecule approaches for studying gene regulation in metabolic tissues.

Farack L, Egozi A, Itzkovitz S.

Diabetes Obes Metab. 2018 Sep;20 Suppl 2:145-156. doi: 10.1111/dom.13390. Review.

PMID:
30230176
2.

metaGraphite - a new layer of pathway annotation to get metabolite networks.

Sales G, Calura E, Romualdi C.

Bioinformatics. 2018 Sep 4. doi: 10.1093/bioinformatics/bty719. [Epub ahead of print]

PMID:
30184047
3.

Gel electrophoresis-based plant proteomics: Past, present, and future. Happy 10th anniversary Journal of Proteomics!

Jorrin-Novo JV, Komatsu S, Sanchez-Lucas R, Rodríguez de Francisco LE.

J Proteomics. 2018 Aug 29. pii: S1874-3919(18)30326-9. doi: 10.1016/j.jprot.2018.08.016. [Epub ahead of print] Review.

PMID:
30170112
4.

HTMoL: full-stack solution for remote access, visualization, and analysis of molecular dynamics trajectory data.

Carrillo-Tripp M, Alvarez-Rivera L, Lara-Ramírez OI, Becerra-Toledo FJ, Vega-Ramírez A, Quijas-Valades E, González-Zavala E, González-Vázquez JC, García-Vieyra J, Santoyo-Rivera NB, Chapa-Vergara SV, Meneses-Viveros A.

J Comput Aided Mol Des. 2018 Aug;32(8):869-876. doi: 10.1007/s10822-018-0141-y. Epub 2018 Aug 6.

PMID:
30084079
5.

Prediction of Mutations to Control Pathways Enabling Tumor Cell Invasion with the CoLoMoTo Interactive Notebook (Tutorial).

Levy N, Naldi A, Hernandez C, Stoll G, Thieffry D, Zinovyev A, Calzone L, Paulevé L.

Front Physiol. 2018 Jul 6;9:787. doi: 10.3389/fphys.2018.00787. eCollection 2018.

6.

Differential protein expression of hippocampal cells associated with heavy metals (Pb, As, and MeHg) neurotoxicity: Deepening into the molecular mechanism of neurodegenerative diseases.

Karri V, Ramos D, Martinez JB, Odena A, Oliveira E, Coort SL, Evelo CT, Mariman ECM, Schuhmacher M, Kumar V.

J Proteomics. 2018 Sep 15;187:106-125. doi: 10.1016/j.jprot.2018.06.020. Epub 2018 Jul 12.

PMID:
30017948
7.

Leukocyte Tracking Database, a collection of immune cell tracks from intravital 2-photon microscopy videos.

Pizzagalli DU, Farsakoglu Y, Palomino-Segura M, Palladino E, Sintes J, Marangoni F, Mempel TR, Koh WH, Murooka TT, Thelen F, Stein JV, Pozzi G, Thelen M, Krause R, Gonzalez SF.

Sci Data. 2018 Jul 17;5:180129. doi: 10.1038/sdata.2018.129.

8.

In vivo labelling of adenovirus DNA identifies chromatin anchoring and biphasic genome replication.

Komatsu T, Quentin-Froignant C, Carlon-Andres I, Lagadec F, Rayne F, Ragues J, Kehlenbach RH, Zhang W, Ehrhardt A, Bystricky K, Morin R, Lagarde JM, Gallardo F, Wodrich H.

J Virol. 2018 Jul 11. pii: JVI.00795-18. doi: 10.1128/JVI.00795-18. [Epub ahead of print]

9.

The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks.

Naldi A, Hernandez C, Levy N, Stoll G, Monteiro PT, Chaouiya C, Helikar T, Zinovyev A, Calzone L, Cohen-Boulakia S, Thieffry D, Paulevé L.

Front Physiol. 2018 Jun 19;9:680. doi: 10.3389/fphys.2018.00680. eCollection 2018.

10.

The Kappa platform for rule-based modeling.

Boutillier P, Maasha M, Li X, Medina-Abarca HF, Krivine J, Feret J, Cristescu I, Forbes AG, Fontana W.

Bioinformatics. 2018 Jul 1;34(13):i583-i592. doi: 10.1093/bioinformatics/bty272.

11.

Random forest based similarity learning for single cell RNA sequencing data.

Pouyan MB, Kostka D.

Bioinformatics. 2018 Jul 1;34(13):i79-i88. doi: 10.1093/bioinformatics/bty260.

12.

OmicsNet: a web-based tool for creation and visual analysis of biological networks in 3D space.

Zhou G, Xia J.

Nucleic Acids Res. 2018 Jul 2;46(W1):W514-W522. doi: 10.1093/nar/gky510.

13.

Freiburg RNA tools: a central online resource for RNA-focused research and teaching.

Raden M, Ali SM, Alkhnbashi OS, Busch A, Costa F, Davis JA, Eggenhofer F, Gelhausen R, Georg J, Heyne S, Hiller M, Kundu K, Kleinkauf R, Lott SC, Mohamed MM, Mattheis A, Miladi M, Richter AS, Will S, Wolff J, Wright PR, Backofen R.

Nucleic Acids Res. 2018 Jul 2;46(W1):W25-W29. doi: 10.1093/nar/gky329.

14.

The new normal of structure/function studies in the era of CRISPR/Cas9.

Logsdon GA, Black BE.

Biochem J. 2018 May 15;475(9):1635-1642. doi: 10.1042/BCJ20170025.

PMID:
29764955
15.

FusionHub: A unified web platform for annotation and visualization of gene fusion events in human cancer.

Panigrahi P, Jere A, Anamika K.

PLoS One. 2018 May 1;13(5):e0196588. doi: 10.1371/journal.pone.0196588. eCollection 2018.

16.

SpirPep: an in silico digestion-based platform to assist bioactive peptides discovery from a genome-wide database.

Anekthanakul K, Hongsthong A, Senachak J, Ruengjitchatchawalya M.

BMC Bioinformatics. 2018 Apr 20;19(1):149. doi: 10.1186/s12859-018-2143-0.

17.

Developing novel methods to image and visualize 3D genomes.

Ma T, Chen L, Shi M, Niu J, Zhang X, Yang X, Zhanghao K, Wang M, Xi P, Jin D, Zhang M, Gao J.

Cell Biol Toxicol. 2018 Oct;34(5):367-380. doi: 10.1007/s10565-018-9427-z. Epub 2018 Mar 26. Review.

18.

Label-free fluorescence imaging of cytochrome c in living systems and anti-cancer drug screening with nitrogen doped carbon quantum dots.

Zhang H, Zhang B, Di C, Ali MC, Chen J, Li Z, Si J, Zhang H, Qiu H.

Nanoscale. 2018 Mar 15;10(11):5342-5349. doi: 10.1039/c7nr08987b.

PMID:
29509193
19.

When Transcriptomics and Metabolomics Work Hand in Hand: A Case Study Characterizing Plant CDF Transcription Factors.

Pérez-Alonso MM, Carrasco-Loba V, Medina J, Vicente-Carbajosa J, Pollmann S.

High Throughput. 2018 Feb 28;7(1). pii: E7. doi: 10.3390/ht7010007. Review.

20.

Data processing, multi-omic pathway mapping, and metabolite activity analysis using XCMS Online.

Forsberg EM, Huan T, Rinehart D, Benton HP, Warth B, Hilmers B, Siuzdak G.

Nat Protoc. 2018 Apr;13(4):633-651. doi: 10.1038/nprot.2017.151. Epub 2018 Mar 1.

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