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Items: 1 to 20 of 22

1.

Comparative genomics of the tardigrades Hypsibius dujardini and Ramazzottius varieornatus.

Yoshida Y, Koutsovoulos G, Laetsch DR, Stevens L, Kumar S, Horikawa DD, Ishino K, Komine S, Kunieda T, Tomita M, Blaxter M, Arakawa K.

PLoS Biol. 2017 Jul 27;15(7):e2002266. doi: 10.1371/journal.pbio.2002266. eCollection 2017 Jul.

2.

GenomeHubs: simple containerized setup of a custom Ensembl database and web server for any species.

Challis RJ, Kumar S, Stevens L, Blaxter M.

Database (Oxford). 2017 Jan 1;2017. doi: 10.1093/database/bax039.

3.

A high-coverage draft genome of the mycalesine butterfly Bicyclus anynana.

Nowell RW, Elsworth B, Oostra V, Zwaan BJ, Wheat CW, Saastamoinen M, Saccheri IJ, Van't Hof AE, Wasik BR, Connahs H, Aslam ML, Kumar S, Challis RJ, Monteiro A, Brakefield PM, Blaxter M.

Gigascience. 2017 Jul 1;6(7):1-7. doi: 10.1093/gigascience/gix035.

4.

No evidence for extensive horizontal gene transfer in the genome of the tardigrade Hypsibius dujardini.

Koutsovoulos G, Kumar S, Laetsch DR, Stevens L, Daub J, Conlon C, Maroon H, Thomas F, Aboobaker AA, Blaxter M.

Proc Natl Acad Sci U S A. 2016 May 3;113(18):5053-8. doi: 10.1073/pnas.1600338113. Epub 2016 Mar 24.

5.

Erratum: Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity.

Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM.

Nat Commun. 2015 Oct 22;6:8772. doi: 10.1038/ncomms9772. No abstract available.

6.

Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity.

Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM.

Nat Commun. 2014 Nov 25;5:5488. doi: 10.1038/ncomms6488. Erratum in: Nat Commun. 2015;6:8772.

7.

Comparative analysis of the secretome from a model filarial nematode (Litomosoides sigmodontis) reveals maximal diversity in gravid female parasites.

Armstrong SD, Babayan SA, Lhermitte-Vallarino N, Gray N, Xia D, Martin C, Kumar S, Taylor DW, Blaxter ML, Wastling JM, Makepeace BL.

Mol Cell Proteomics. 2014 Oct;13(10):2527-44. doi: 10.1074/mcp.M114.038539. Epub 2014 Jun 23.

8.

The complex hybrid origins of the root knot nematodes revealed through comparative genomics.

Lunt DH, Kumar S, Koutsovoulos G, Blaxter ML.

PeerJ. 2014 May 6;2:e356. doi: 10.7717/peerj.356. eCollection 2014.

9.

The genome of Romanomermis culicivorax: revealing fundamental changes in the core developmental genetic toolkit in Nematoda.

Schiffer PH, Kroiher M, Kraus C, Koutsovoulos GD, Kumar S, Camps JI, Nsah NA, Stappert D, Morris K, Heger P, Altmüller J, Frommolt P, Nürnberg P, Thomas WK, Blaxter ML, Schierenberg E.

BMC Genomics. 2013 Dec 27;14:923. doi: 10.1186/1471-2164-14-923.

10.

Blobology: exploring raw genome data for contaminants, symbionts and parasites using taxon-annotated GC-coverage plots.

Kumar S, Jones M, Koutsovoulos G, Clarke M, Blaxter M.

Front Genet. 2013 Nov 29;4:237. doi: 10.3389/fgene.2013.00237. eCollection 2013.

11.

Phylogenomics and analysis of shared genes suggest a single transition to mutualism in Wolbachia of nematodes.

Comandatore F, Sassera D, Montagna M, Kumar S, Koutsovoulos G, Thomas G, Repton C, Babayan SA, Gray N, Cordaux R, Darby A, Makepeace B, Blaxter M.

Genome Biol Evol. 2013;5(9):1668-74. doi: 10.1093/gbe/evt125.

12.

Sulfur amino acids regulate translational capacity and metabolic homeostasis through modulation of tRNA thiolation.

Laxman S, Sutter BM, Wu X, Kumar S, Guo X, Trudgian DC, Mirzaei H, Tu BP.

Cell. 2013 Jul 18;154(2):416-29. doi: 10.1016/j.cell.2013.06.043.

13.

Silencing of germline-expressed genes by DNA elimination in somatic cells.

Wang J, Mitreva M, Berriman M, Thorne A, Magrini V, Koutsovoulos G, Kumar S, Blaxter ML, Davis RE.

Dev Cell. 2012 Nov 13;23(5):1072-80. doi: 10.1016/j.devcel.2012.09.020. Epub 2012 Nov 1.

14.

The genome of the heartworm, Dirofilaria immitis, reveals drug and vaccine targets.

Godel C, Kumar S, Koutsovoulos G, Ludin P, Nilsson D, Comandatore F, Wrobel N, Thompson M, Schmid CD, Goto S, Bringaud F, Wolstenholme A, Bandi C, Epe C, Kaminsky R, Blaxter M, Mäser P.

FASEB J. 2012 Nov;26(11):4650-61. doi: 10.1096/fj.12-205096. Epub 2012 Aug 13.

15.

Simultaneous genome sequencing of symbionts and their hosts.

Kumar S, Blaxter ML.

Symbiosis. 2011 Nov;55(3):119-126. Epub 2012 Feb 15.

16.

Toward 959 nematode genomes.

Kumar S, Koutsovoulos G, Kaur G, Blaxter M.

Worm. 2012 Jan 1;1(1):42-50. doi: 10.4161/worm.19046. Review.

17.

959 Nematode Genomes: a semantic wiki for coordinating sequencing projects.

Kumar S, Schiffer PH, Blaxter M.

Nucleic Acids Res. 2012 Jan;40(Database issue):D1295-300. doi: 10.1093/nar/gkr826. Epub 2011 Nov 3.

18.

Comparing de novo assemblers for 454 transcriptome data.

Kumar S, Blaxter ML.

BMC Genomics. 2010 Oct 16;11:571. doi: 10.1186/1471-2164-11-571.

19.

Experimental evolution, genetic analysis and genome re-sequencing reveal the mutation conferring artemisinin resistance in an isogenic lineage of malaria parasites.

Hunt P, Martinelli A, Modrzynska K, Borges S, Creasey A, Rodrigues L, Beraldi D, Loewe L, Fawcett R, Kumar S, Thomson M, Trivedi U, Otto TD, Pain A, Blaxter M, Cravo P.

BMC Genomics. 2010 Sep 16;11:499. doi: 10.1186/1471-2164-11-499.

20.

Characterization of a hotspot for mimicry: assembly of a butterfly wing transcriptome to genomic sequence at the HmYb/Sb locus.

Ferguson L, Lee SF, Chamberlain N, Nadeau N, Joron M, Baxter S, Wilkinson P, Papanicolaou A, Kumar S, Kee TJ, Clark R, Davidson C, Glithero R, Beasley H, Vogel H, Ffrench-Constant R, Jiggins C.

Mol Ecol. 2010 Mar;19 Suppl 1:240-54. doi: 10.1111/j.1365-294X.2009.04475.x.

PMID:
20331783

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