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Items: 11

1.

TROVE: A User-friendly Tool for Visualizing and Analyzing Cancer Hallmarks in Signaling Networks.

Chua HE, Bhowmick SS, Zheng J.

Bioinformatics. 2017 Sep 22. doi: 10.1093/bioinformatics/btx600. [Epub ahead of print]

PMID:
29028982
2.

Synergistic target combination prediction from curated signaling networks: Machine learning meets systems biology and pharmacology.

Chua HE, Bhowmick SS, Tucker-Kellogg L.

Methods. 2017 Oct 1;129:60-80. doi: 10.1016/j.ymeth.2017.05.015. Epub 2017 May 25.

PMID:
28552265
3.

TENET: topological feature-based target characterization in signalling networks.

Chua HE, Bhowmick SS, Tucker-Kellogg L, Dewey CF Jr.

Bioinformatics. 2015 Oct 15;31(20):3306-14. doi: 10.1093/bioinformatics/btv360. Epub 2015 Jun 16.

PMID:
26079348
4.

Computational cell fate modelling for discovery of rewiring in apoptotic network for enhanced cancer drug sensitivity.

Mishra SK, Bhowmick SS, Chua H, Zhang F, Zheng J.

BMC Syst Biol. 2015;9 Suppl 1:S4. doi: 10.1186/1752-0509-9-S1-S4. Epub 2015 Jan 21.

5.

DiffNet: automatic differential functional summarization of dE-MAP networks.

Seah BS, Bhowmick SS, Dewey CF Jr.

Methods. 2014 Oct 1;69(3):247-56. doi: 10.1016/j.ymeth.2014.06.012. Epub 2014 Jul 5.

PMID:
25009128
6.

DualAligner: a dual alignment-based strategy to align protein interaction networks.

Seah BS, Bhowmick SS, Dewey CF Jr.

Bioinformatics. 2014 Sep 15;30(18):2619-26. doi: 10.1093/bioinformatics/btu358. Epub 2014 May 28.

PMID:
24872427
7.

Plasmin triggers a switch-like decrease in thrombospondin-dependent activation of TGF-β1.

Venkatraman L, Chia SM, Narmada BC, White JK, Bhowmick SS, Forbes Dewey C Jr, So PT, Tucker-Kellogg L, Yu H.

Biophys J. 2012 Sep 5;103(5):1060-8.

8.

FACETS: multi-faceted functional decomposition of protein interaction networks.

Seah BS, Bhowmick SS, Dewey CF Jr.

Bioinformatics. 2012 Oct 15;28(20):2624-31. doi: 10.1093/bioinformatics/bts469. Epub 2012 Aug 20.

9.

FUSE: a profit maximization approach for functional summarization of biological networks.

Seah BS, Bhowmick SS, Dewey CF Jr, Yu H.

BMC Bioinformatics. 2012 Mar 21;13 Suppl 3:S10. doi: 10.1186/1471-2105-13-S3-S10.

10.

Steady states and dynamics of urokinase-mediated plasmin activation in silico and in vitro.

Venkatraman L, Li H, Dewey CF Jr, White JK, Bhowmick SS, Yu H, Tucker-Kellogg L.

Biophys J. 2011 Oct 19;101(8):1825-34. doi: 10.1016/j.bpj.2011.08.054.

11.

The steady states and dynamics of urokinase-mediated plasmin activation.

Venkatraman L, Yu H, Bhowmick SS, Dewey F, Tucker-Kellogg L.

Pac Symp Biocomput. 2010:190-200.

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