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Items: 1 to 20 of 21


Leveraging crowdsourcing to accelerate global health solutions.

Davis S, Button-Simons K, Bensellak T, Ahsen EM, Checkley L, Foster GJ, Su X, Moussa A, Mapiye D, Khoo SK, Nosten F, Anderson TJC, Vendrely K, Bletz J, Yu T, Panji S, Ghouila A, Mulder N, Norman T, Kern S, Meyer P, Stolovitzky G, Ferdig MT, Siwo GH.

Nat Biotechnol. 2019 Aug;37(8):848-850. doi: 10.1038/s41587-019-0180-5. No abstract available.


Cancer-malaria: hidden connections.

Nordor AV, Bellet D, Siwo GH.

Open Biol. 2018 Oct 31;8(10). pii: 180127. doi: 10.1098/rsob.180127.


Hackathons as a means of accelerating scientific discoveries and knowledge transfer.

Ghouila A, Siwo GH, Entfellner JD, Panji S, Button-Simons KA, Davis SZ, Fadlelmola FM; DREAM of Malaria Hackathon Participants, Ferdig MT, Mulder N.

Genome Res. 2018 May;28(5):759-765. doi: 10.1101/gr.228460.117. Epub 2018 Apr 12.


Simultaneous genome-wide gene expression and transcript isoform profiling in the human malaria parasite.

Turnbull LB, Siwo GH, Button-Simons KA, Tan A, Checkley LA, Painter HJ, Llinás M, Ferdig MT.

PLoS One. 2017 Nov 7;12(11):e0187595. doi: 10.1371/journal.pone.0187595. eCollection 2017.


Prediction of fine-tuned promoter activity from DNA sequence.

Siwo G, Rider A, Tan A, Pinapati R, Emrich S, Chawla N, Ferdig M.

F1000Res. 2016 Feb 11;5:158. doi: 10.12688/f1000research.7485.1. eCollection 2016.


The Metagenomics and Metadesign of the Subways and Urban Biomes (MetaSUB) International Consortium inaugural meeting report.

MetaSUB International Consortium.

Microbiome. 2016 Jun 3;4(1):24. doi: 10.1186/s40168-016-0168-z. Erratum in: Microbiome. 2016;4(1):45.


An integrative analysis of small molecule transcriptional responses in the human malaria parasite Plasmodium falciparum.

Siwo GH, Smith RS, Tan A, Button-Simons KA, Checkley LA, Ferdig MT.

BMC Genomics. 2015 Dec 4;16:1030. doi: 10.1186/s12864-015-2165-1.


Chemogenomic profiling of Plasmodium falciparum as a tool to aid antimalarial drug discovery.

Pradhan A, Siwo GH, Singh N, Martens B, Balu B, Button-Simons KA, Tan A, Zhang M, Udenze KO, Jiang RH, Ferdig MT, Adams JH, Kyle DE.

Sci Rep. 2015 Nov 6;5:15930. doi: 10.1038/srep15930.


Erratum to: The future of genomic medicine education in Africa.

Siwo GH, Williams SM, Moore JH.

Genome Med. 2015 Aug 3;7(1):70. doi: 10.1186/s13073-015-0193-8. eCollection 2015. No abstract available.


The future of genomic medicine education in Africa.

Siwo GH, Williams SM, Moore JH.

Genome Med. 2015 May 23;7(1):47. doi: 10.1186/s13073-015-0175-x. eCollection 2015. Erratum in: Genome Med. 2015;7(1):70.


Predicting functional and regulatory divergence of a drug resistance transporter gene in the human malaria parasite.

Siwo GH, Tan A, Button-Simons KA, Samarakoon U, Checkley LA, Pinapati RS, Ferdig MT.

BMC Genomics. 2015 Feb 22;16:115. doi: 10.1186/s12864-015-1261-6.


Networks' Characteristics Matter for Systems Biology.

Rider AK, Milenković T, Siwo GH, Pinapati RS, Emrich SJ, Ferdig MT, Chawla NV.

Netw Sci (Camb Univ Press). 2014 Aug;2(2):139-161. Epub 2014 Sep 3.


A supervised learning approach to the ensemble clustering of genes.

Rider AK, Siwo G, Emrich SJ, Ferdig MT, Chawla NV.

Int J Data Min Bioinform. 2014;9(2):199-219.


Genome sequence of the tsetse fly (Glossina morsitans): vector of African trypanosomiasis.

International Glossina Genome Initiative.

Science. 2014 Apr 25;344(6182):380-6. doi: 10.1126/science.1249656.


Inferring gene expression from ribosomal promoter sequences, a crowdsourcing approach.

Meyer P, Siwo G, Zeevi D, Sharon E, Norel R; DREAM6 Promoter Prediction Consortium, Segal E, Stolovitzky G.

Genome Res. 2013 Nov;23(11):1928-37. doi: 10.1101/gr.157420.113. Epub 2013 Aug 15.


Symmetric Epistasis Estimation (SEE) and its application to dissecting interaction map of Plasmodium falciparum.

Huang Y, Siwo G, Wuchty S, Ferdig MT, Przytycka TM.

Mol Biosyst. 2012 Apr;8(5):1544-52. doi: 10.1039/c2mb05333k. Epub 2012 Mar 15.


Shared molecular strategies of the malaria parasite P. falciparum and the human virus HIV-1.

Wuchty S, Siwo GH, Ferdig MT.

Mol Cell Proteomics. 2011 Oct;10(10):M111.009035. doi: 10.1074/mcp.M111.009035. Epub 2011 May 17.


A statistical approach to finding overlooked genetic associations.

Rider AK, Siwo G, Chawla NV, Ferdig M, Emrich SJ.

BMC Bioinformatics. 2010 Oct 21;11:526. doi: 10.1186/1471-2105-11-526.


Quantitative trait loci mapping reveals candidate pathways regulating cell cycle duration in Plasmodium falciparum.

Reilly Ayala HB, Wacker MA, Siwo G, Ferdig MT.

BMC Genomics. 2010 Oct 18;11:577. doi: 10.1186/1471-2164-11-577.


Viral organization of human proteins.

Wuchty S, Siwo G, Ferdig MT.

PLoS One. 2010 Aug 25;5(8):e11796. doi: 10.1371/journal.pone.0011796.

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