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Items: 1 to 20 of 27

1.

Molecular basis of CENP-C association with the CENP-A nucleosome at yeast centromeres.

Xiao H, Wang F, Wisniewski J, Shaytan AK, Ghirlando R, FitzGerald PC, Huang Y, Wei D, Li S, Landsman D, Panchenko AR, Wu C.

Genes Dev. 2017 Oct 1;31(19):1958-1972. doi: 10.1101/gad.304782.117. Epub 2017 Oct 26.

2.

Hydroxyl-radical footprinting combined with molecular modeling identifies unique features of DNA conformation and nucleosome positioning.

Shaytan AK, Xiao H, Armeev GA, Wu C, Landsman D, Panchenko AR.

Nucleic Acids Res. 2017 Sep 19;45(16):9229-9243. doi: 10.1093/nar/gkx616.

3.

Dual Active Site in the Endolytic Transglycosylase gp144 of Bacteriophage phiKZ.

Chertkov OV, Armeev GA, Uporov IV, Legotsky SA, Sykilinda NN, Shaytan AK, Klyachko NL, Miroshnikov KA.

Acta Naturae. 2017 Jan-Mar;9(1):81-87.

4.

MS_HistoneDB, a manually curated resource for proteomic analysis of human and mouse histones.

El Kennani S, Adrait A, Shaytan AK, Khochbin S, Bruley C, Panchenko AR, Landsman D, Pflieger D, Govin J.

Epigenetics Chromatin. 2017 Jan 10;10:2. doi: 10.1186/s13072-016-0109-x. eCollection 2017.

5.

Genomic profiling of multiple sequentially acquired tumor metastatic sites from an "exceptional responder" lung adenocarcinoma patient reveals extensive genomic heterogeneity and novel somatic variants driving treatment response.

Biswas R, Gao S, Cultraro CM, Maity TK, Venugopalan A, Abdullaev Z, Shaytan AK, Carter CA, Thomas A, Rajan A, Song Y, Pitts S, Chen K, Bass S, Boland J, Hanada KI, Chen J, Meltzer PS, Panchenko AR, Yang JC, Pack S, Giaccone G, Schrump DS, Khan J, Guha U.

Cold Spring Harb Mol Case Stud. 2016 Nov;2(6):a001263.

6.

Large-scale ATP-independent nucleosome unfolding by a histone chaperone.

Valieva ME, Armeev GA, Kudryashova KS, Gerasimova NS, Shaytan AK, Kulaeva OI, McCullough LL, Formosa T, Georgiev PG, Kirpichnikov MP, Studitsky VM, Feofanov AV.

Nat Struct Mol Biol. 2016 Dec;23(12):1111-1116. doi: 10.1038/nsmb.3321. Epub 2016 Nov 7.

7.

Nucleosomal Barrier to Transcription: Structural Determinants and Changes in Chromatin Structure.

Studitsky VM, Nizovtseva EV, Shaytan AK, Luse DS.

Biochem Mol Biol J. 2016;2(2). pii: 8. Epub 2016 May 30.

8.

Structure and Functions of Linker Histones.

Lyubitelev AV, Nikitin DV, Shaytan AK, Studitsky VM, Kirpichnikov MP.

Biochemistry (Mosc). 2016 Mar;81(3):213-23. doi: 10.1134/S0006297916030032. Review.

PMID:
27262190
9.

Trajectories of microsecond molecular dynamics simulations of nucleosomes and nucleosome core particles.

Shaytan AK, Armeev GA, Goncearenco A, Zhurkin VB, Landsman D, Panchenko AR.

Data Brief. 2016 May 6;7:1678-81. doi: 10.1016/j.dib.2016.04.073. eCollection 2016 Jun.

10.
11.

HistoneDB 2.0: a histone database with variants--an integrated resource to explore histones and their variants.

Draizen EJ, Shaytan AK, Mariño-Ramírez L, Talbert PB, Landsman D, Panchenko AR.

Database (Oxford). 2016 Mar 17;2016. pii: baw014. doi: 10.1093/database/baw014. Print 2016.

12.

Coupling between Histone Conformations and DNA Geometry in Nucleosomes on a Microsecond Timescale: Atomistic Insights into Nucleosome Functions.

Shaytan AK, Armeev GA, Goncearenco A, Zhurkin VB, Landsman D, Panchenko AR.

J Mol Biol. 2016 Jan 16;428(1):221-237. doi: 10.1016/j.jmb.2015.12.004. Epub 2015 Dec 14.

13.

Structural analysis of nucleosomal barrier to transcription.

Gaykalova DA, Kulaeva OI, Volokh O, Shaytan AK, Hsieh FK, Kirpichnikov MP, Sokolova OS, Studitsky VM.

Proc Natl Acad Sci U S A. 2015 Oct 27;112(43):E5787-95. doi: 10.1073/pnas.1508371112. Epub 2015 Oct 12.

14.

Structural Perspectives on the Evolutionary Expansion of Unique Protein-Protein Binding Sites.

Goncearenco A, Shaytan AK, Shoemaker BA, Panchenko AR.

Biophys J. 2015 Sep 15;109(6):1295-306. doi: 10.1016/j.bpj.2015.06.056. Epub 2015 Jul 23.

15.

Nucleosome adaptability conferred by sequence and structural variations in histone H2A-H2B dimers.

Shaytan AK, Landsman D, Panchenko AR.

Curr Opin Struct Biol. 2015 Jun;32:48-57. doi: 10.1016/j.sbi.2015.02.004. Epub 2015 Feb 27. Review.

16.

Direct prediction of residual dipolar couplings of small molecules in a stretched gel by stochastic molecular dynamics simulations.

Frank AO, Freudenberger JC, Shaytan AK, Kessler H, Luy B.

Magn Reson Chem. 2015 Mar;53(3):213-7. doi: 10.1002/mrc.4181. Epub 2015 Jan 22.

PMID:
25612077
17.

Genome packaging in EL and Lin68, two giant phiKZ-like bacteriophages of P. aeruginosa.

Sokolova OS, Shaburova OV, Pechnikova EV, Shaytan AK, Krylov SV, Kiselev NA, Krylov VN.

Virology. 2014 Nov;468-470:472-478. doi: 10.1016/j.virol.2014.09.002. Epub 2014 Sep 22.

18.

Physicochemical mechanisms of protein regulation by phosphorylation.

Nishi H, Shaytan A, Panchenko AR.

Front Genet. 2014 Aug 7;5:270. doi: 10.3389/fgene.2014.00270. eCollection 2014. Review.

19.

Comparative computational study of interaction of C60-fullerene and tris-malonyl-C60-fullerene isomers with lipid bilayer: relation to their antioxidant effect.

Bozdaganyan ME, Orekhov PS, Shaytan AK, Shaitan KV.

PLoS One. 2014 Jul 14;9(7):e102487. doi: 10.1371/journal.pone.0102487. eCollection 2014.

20.

Voltage-gated ion channel modulation by lipids: insights from molecular dynamics simulations.

Kasimova MA, Tarek M, Shaytan AK, Shaitan KV, Delemotte L.

Biochim Biophys Acta. 2014 May;1838(5):1322-31. doi: 10.1016/j.bbamem.2014.01.024. Epub 2014 Feb 8.

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