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Items: 1 to 20 of 166

1.

A Comparison of Three Different Bioinformatics Analyses of the 16S-23S rRNA Encoding Region for Bacterial Identification.

Peker N, Garcia-Croes S, Dijkhuizen B, Wiersma HH, van Zanten E, Wisselink G, Friedrich AW, Kooistra-Smid M, Sinha B, Rossen JWA, Couto N.

Front Microbiol. 2019 Apr 16;10:620. doi: 10.3389/fmicb.2019.00620. eCollection 2019.

2.

Author Correction: Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens.

Couto N, Schuele L, Raangs EC, Machado MP, Mendes CI, Jesus TF, Chlebowicz M, Rosema S, Ramirez M, Carriço JA, Autenrieth IB, Friedrich AW, Peter S, Rossen JW.

Sci Rep. 2019 Apr 17;9(1):6406. doi: 10.1038/s41598-019-42134-9.

3.
4.

Prevalence of antimicrobial resistance genes in Bacteroides spp. and Prevotella spp. Dutch clinical isolates.

Veloo ACM, Baas WH, Haan FJ, Coco J, Rossen JW.

Clin Microbiol Infect. 2019 Feb 22. pii: S1198-743X(19)30083-7. doi: 10.1016/j.cmi.2019.02.017. [Epub ahead of print]

5.

Epidemiological Typing of Serratia marcescens Isolates by Whole-Genome Multilocus Sequence Typing.

Rossen JWA, Dombrecht J, Vanfleteren D, De Bruyne K, van Belkum A, Rosema S, Lokate M, Bathoorn E, Reuter S, Grundmann H, Ertel J, Higgins PG, Seifert H.

J Clin Microbiol. 2019 Mar 28;57(4). pii: e01652-18. doi: 10.1128/JCM.01652-18. Print 2019 Apr.

PMID:
30728192
6.

Proof of an Outer Membrane Target of the Efflux Inhibitor Phe-Arg-β-Naphthylamide from Random Mutagenesis.

Schuster S, Bohnert JA, Vavra M, Rossen JW, Kern WV.

Molecules. 2019 Jan 29;24(3). pii: E470. doi: 10.3390/molecules24030470.

7.

Association between rectal colonization with Highly Resistant Gram-negative Rods (HR-GNRs) and subsequent infection with HR-GNRs in clinical patients: A one year historical cohort study.

Souverein D, Euser SM, Herpers BL, Kluytmans J, Rossen JWA, Den Boer JW.

PLoS One. 2019 Jan 25;14(1):e0211016. doi: 10.1371/journal.pone.0211016. eCollection 2019.

8.

Proportion of asylum seekers carrying multi-drug resistant microorganisms is persistently increased after arrival in the Netherlands.

Ravensbergen SJ, Louka C, Ott A, Rossen JW, Cornish D, Pournaras S, Bathoorn E, Stienstra Y.

Antimicrob Resist Infect Control. 2019 Jan 7;8:6. doi: 10.1186/s13756-018-0455-5. eCollection 2019.

9.

The challenges of designing a benchmark strategy for bioinformatics pipelines in the identification of antimicrobial resistance determinants using next generation sequencing technologies.

Angers-Loustau A, Petrillo M, Bengtsson-Palme J, Berendonk T, Blais B, Chan KG, Coque TM, Hammer P, Heß S, Kagkli DM, Krumbiegel C, Lanza VF, Madec JY, Naas T, O'Grady J, Paracchini V, Rossen JWA, Ruppé E, Vamathevan J, Venturi V, Van den Eede G.

Version 2. F1000Res. 2018 Apr 13 [revised 2018 Jan 1];7. pii: ISCB Comm J-459. doi: 10.12688/f1000research.14509.2. eCollection 2018.

10.

Antimicrobial Resistance in Class 1 Integron-Positive Shiga Toxin-Producing Escherichia coli Isolated from Cattle, Pigs, Food and Farm Environment.

Colello R, Krüger A, Conza JD, Rossen JWA, Friedrich AW, Gutkind G, Etcheverría AI, Padola NL.

Microorganisms. 2018 Sep 28;6(4). pii: E99. doi: 10.3390/microorganisms6040099.

11.

Elucidating vancomycin-resistant Enterococcus faecium outbreaks: the role of clonal spread and movement of mobile genetic elements.

Zhou X, Chlebowicz MA, Bathoorn E, Rosema S, Couto N, Lokate M, Arends JP, Friedrich AW, Rossen JWA.

J Antimicrob Chemother. 2018 Dec 1;73(12):3259-3267. doi: 10.1093/jac/dky349.

PMID:
30219855
12.

Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens.

Couto N, Schuele L, Raangs EC, Machado MP, Mendes CI, Jesus TF, Chlebowicz M, Rosema S, Ramirez M, Carriço JA, Autenrieth IB, Friedrich AW, Peter S, Rossen JW.

Sci Rep. 2018 Sep 13;8(1):13767. doi: 10.1038/s41598-018-31873-w. Erratum in: Sci Rep. 2019 Apr 17;9(1):6406.

13.

Extended-spectrum beta-lactamase producing Enterobacteriaceae (ESBL-E) isolated from bean sprouts in the Netherlands.

Huizinga P, Schrauwen E, García-Cobos S, Willemsen I, Verhulst C, Friedrich AW, Savelkoul PHM, Rossen JW, Kluytmans J.

PLoS One. 2018 Aug 30;13(8):e0203338. doi: 10.1371/journal.pone.0203338. eCollection 2018.

14.

Sonication of heart valves detects more bacteria in infective endocarditis.

Gomes A, van Oosten M, Bijker KLB, Boiten KE, Salomon EN, Rosema S, Rossen JWA, Natour E, Douglas YL, Kampinga GA, van Assen S, Sinha B.

Sci Rep. 2018 Aug 28;8(1):12967. doi: 10.1038/s41598-018-31029-w.

15.

Typing and Species Identification of Clinical Klebsiella Isolates by Fourier Transform Infrared Spectroscopy and Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry.

Dinkelacker AG, Vogt S, Oberhettinger P, Mauder N, Rau J, Kostrzewa M, Rossen JWA, Autenrieth IB, Peter S, Liese J.

J Clin Microbiol. 2018 Oct 25;56(11). pii: e00843-18. doi: 10.1128/JCM.00843-18. Print 2018 Nov.

16.

An ancient family of mobile genomic islands introducing cephalosporinase and carbapenemase genes in Enterobacteriaceae.

Nepal S, Bonn F, Grasso S, Stobernack T, de Jong A, Zhou K, Wedema R, Rosema S, Becher D, Otto A, Rossen JW, van Dijl JM, Bathoorn E.

Virulence. 2018;9(1):1377-1389. doi: 10.1080/21505594.2018.1509666.

17.

Detection of Legionella Anisa in Water from Hospital Dental Chair Units and Molecular Characterization by Whole-Genome Sequencing.

Fleres G, Couto N, Lokate M, van der Sluis LWM, Ginevra C, Jarraud S, Deurenberg RH, Rossen JW, García-Cobos S, Friedrich AW.

Microorganisms. 2018 Jul 18;6(3). pii: E71. doi: 10.3390/microorganisms6030071.

18.

Evaluation of a Culture-Dependent Algorithm and a Molecular Algorithm for Identification of Shigella spp., Escherichia coli, and Enteroinvasive E. coli.

van den Beld MJC, de Boer RF, Reubsaet FAG, Rossen JWA, Zhou K, Kuiling S, Friedrich AW, Kooistra-Smid MAMD.

J Clin Microbiol. 2018 Sep 25;56(10). pii: e00510-18. doi: 10.1128/JCM.00510-18. Print 2018 Oct.

19.

Three metronidazole-resistant Prevotella bivia strains harbour a mobile element, encoding a novel nim gene, nimK, and an efflux small MDR transporter.

Veloo ACM, Chlebowicz M, Winter HLJ, Bathoorn D, Rossen JWA.

J Antimicrob Chemother. 2018 Oct 1;73(10):2687-2690. doi: 10.1093/jac/dky236.

20.

Fosfomycin Etest for Enterobacteriaceae: Interobserver and interlaboratory agreement.

van Mens SP, Ten Doesschate T, Kluytmans-van den Bergh MFQ, Mouton JW, Rossen JWA, Verhulst C, Bonten MJM, Kluytmans JAJW.

Int J Antimicrob Agents. 2018 Nov;52(5):678-681. doi: 10.1016/j.ijantimicag.2018.06.014. Epub 2018 Jun 27.

PMID:
29958976

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