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Items: 1 to 20 of 32

1.

OrthoInspector 3.0: open portal for comparative genomics.

Nevers Y, Kress A, Defosset A, Ripp R, Linard B, Thompson JD, Poch O, Lecompte O.

Nucleic Acids Res. 2019 Jan 8;47(D1):D411-D418. doi: 10.1093/nar/gky1068.

2.

Evolutionary conservation and functional implications of circular code motifs in eukaryotic genomes.

Dila G, Michel CJ, Poch O, Ripp R, Thompson JD.

Biosystems. 2018 Oct 24;175:57-74. doi: 10.1016/j.biosystems.2018.10.014. [Epub ahead of print]

PMID:
30367916
3.

Enrichment of Circular Code Motifs in the Genes of the Yeast Saccharomyces cerevisiae.

Michel CJ, Ngoune VN, Poch O, Ripp R, Thompson JD.

Life (Basel). 2017 Dec 3;7(4). pii: E52. doi: 10.3390/life7040052.

4.

MyGeneFriends: A Social Network Linking Genes, Genetic Diseases, and Researchers.

Allot A, Chennen K, Nevers Y, Poidevin L, Kress A, Ripp R, Thompson JD, Poch O, Lecompte O.

J Med Internet Res. 2017 Jun 16;19(6):e212. doi: 10.2196/jmir.6676.

5.

MiSynPat: An integrated knowledge base linking clinical, genetic, and structural data for disease-causing mutations in human mitochondrial aminoacyl-tRNA synthetases.

Moulinier L, Ripp R, Castillo G, Poch O, Sissler M.

Hum Mutat. 2017 Oct;38(10):1316-1324. doi: 10.1002/humu.23277. Epub 2017 Jun 27.

6.

Insights into Ciliary Genes and Evolution from Multi-Level Phylogenetic Profiling.

Nevers Y, Prasad MK, Poidevin L, Chennen K, Allot A, Kress A, Ripp R, Thompson JD, Dollfus H, Poch O, Lecompte O.

Mol Biol Evol. 2017 Aug 1;34(8):2016-2034. doi: 10.1093/molbev/msx146.

7.

Identification of an Alternative Splicing Product of the Otx2 Gene Expressed in the Neural Retina and Retinal Pigmented Epithelial Cells.

Kole C, Berdugo N, Da Silva C, Aït-Ali N, Millet-Puel G, Pagan D, Blond F, Poidevin L, Ripp R, Fontaine V, Wincker P, Zack DJ, Sahel JA, Poch O, Léveillard T.

PLoS One. 2016 Mar 17;11(3):e0150758. doi: 10.1371/journal.pone.0150758. eCollection 2016.

8.

Integrated annotation and analysis of in situ hybridization images using the ImAnno system: application to the ear and sensory organs of the fetal mouse.

Romand R, Ripp R, Poidevin L, Boeglin M, Geffers L, Dollé P, Poch O.

PLoS One. 2015 Feb 23;10(2):e0118024. doi: 10.1371/journal.pone.0118024. eCollection 2015.

9.

OrthoInspector 2.0: Software and database updates.

Linard B, Allot A, Schneider R, Morel C, Ripp R, Bigler M, Thompson JD, Poch O, Lecompte O.

Bioinformatics. 2015 Feb 1;31(3):447-8. doi: 10.1093/bioinformatics/btu642. Epub 2014 Oct 1.

PMID:
25273105
10.

PARSEC: PAtteRn SEarch and Contextualization.

Allot A, Anno YN, Poidevin L, Ripp R, Poch O, Lecompte O.

Bioinformatics. 2013 Oct 15;29(20):2643-4. doi: 10.1093/bioinformatics/btt455. Epub 2013 Aug 7.

PMID:
23929031
11.

Seven new loci associated with age-related macular degeneration.

Fritsche LG, Chen W, Schu M, Yaspan BL, Yu Y, Thorleifsson G, Zack DJ, Arakawa S, Cipriani V, Ripke S, Igo RP Jr, Buitendijk GH, Sim X, Weeks DE, Guymer RH, Merriam JE, Francis PJ, Hannum G, Agarwal A, Armbrecht AM, Audo I, Aung T, Barile GR, Benchaboune M, Bird AC, Bishop PN, Branham KE, Brooks M, Brucker AJ, Cade WH, Cain MS, Campochiaro PA, Chan CC, Cheng CY, Chew EY, Chin KA, Chowers I, Clayton DG, Cojocaru R, Conley YP, Cornes BK, Daly MJ, Dhillon B, Edwards AO, Evangelou E, Fagerness J, Ferreyra HA, Friedman JS, Geirsdottir A, George RJ, Gieger C, Gupta N, Hagstrom SA, Harding SP, Haritoglou C, Heckenlively JR, Holz FG, Hughes G, Ioannidis JP, Ishibashi T, Joseph P, Jun G, Kamatani Y, Katsanis N, N Keilhauer C, Khan JC, Kim IK, Kiyohara Y, Klein BE, Klein R, Kovach JL, Kozak I, Lee CJ, Lee KE, Lichtner P, Lotery AJ, Meitinger T, Mitchell P, Mohand-Saïd S, Moore AT, Morgan DJ, Morrison MA, Myers CE, Naj AC, Nakamura Y, Okada Y, Orlin A, Ortube MC, Othman MI, Pappas C, Park KH, Pauer GJ, Peachey NS, Poch O, Priya RR, Reynolds R, Richardson AJ, Ripp R, Rudolph G, Ryu E, Sahel JA, Schaumberg DA, Scholl HP, Schwartz SG, Scott WK, Shahid H, Sigurdsson H, Silvestri G, Sivakumaran TA, Smith RT, Sobrin L, Souied EH, Stambolian DE, Stefansson H, Sturgill-Short GM, Takahashi A, Tosakulwong N, Truitt BJ, Tsironi EE, Uitterlinden AG, van Duijn CM, Vijaya L, Vingerling JR, Vithana EN, Webster AR, Wichmann HE, Winkler TW, Wong TY, Wright AF, Zelenika D, Zhang M, Zhao L, Zhang K, Klein ML, Hageman GS, Lathrop GM, Stefansson K, Allikmets R, Baird PN, Gorin MB, Wang JJ, Klaver CC, Seddon JM, Pericak-Vance MA, Iyengar SK, Yates JR, Swaroop A, Weber BH, Kubo M, Deangelis MM, Léveillard T, Thorsteinsdottir U, Haines JL, Farrer LA, Heid IM, Abecasis GR; AMD Gene Consortium.

Nat Genet. 2013 Apr;45(4):433-9, 439e1-2. doi: 10.1038/ng.2578. Epub 2013 Mar 3.

12.

Functional insights into the core-TFIIH from a comparative survey.

Bedez F, Linard B, Brochet X, Ripp R, Thompson JD, Moras D, Lecompte O, Poch O.

Genomics. 2013 Mar;101(3):178-86. doi: 10.1016/j.ygeno.2012.11.003. Epub 2012 Nov 10.

13.

Evolutionary analysis of the ENTH/ANTH/VHS protein superfamily reveals a coevolution between membrane trafficking and metabolism.

De Craene JO, Ripp R, Lecompte O, Thompson JD, Poch O, Friant S.

BMC Genomics. 2012 Jul 2;13:297. doi: 10.1186/1471-2164-13-297.

14.

KD4v: Comprehensible Knowledge Discovery System for Missense Variant.

Luu TD, Rusu A, Walter V, Linard B, Poidevin L, Ripp R, Moulinier L, Muller J, Raffelsberger W, Wicker N, Lecompte O, Thompson JD, Poch O, Nguyen H.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W71-5. doi: 10.1093/nar/gks474. Epub 2012 May 27.

15.

MSV3d: database of human MisSense Variants mapped to 3D protein structure.

Luu TD, Rusu AM, Walter V, Ripp R, Moulinier L, Muller J, Toursel T, Thompson JD, Poch O, Nguyen H.

Database (Oxford). 2012 Apr 3;2012:bas018. doi: 10.1093/database/bas018. Print 2012.

16.

Transcriptomic analysis of human retinal detachment reveals both inflammatory response and photoreceptor death.

Delyfer MN, Raffelsberger W, Mercier D, Korobelnik JF, Gaudric A, Charteris DG, Tadayoni R, Metge F, Caputo G, Barale PO, Ripp R, Muller JD, Poch O, Sahel JA, Léveillard T.

PLoS One. 2011;6(12):e28791. doi: 10.1371/journal.pone.0028791. Epub 2011 Dec 9.

17.

Conjugating effects of symbionts and environmental factors on gene expression in deep-sea hydrothermal vent mussels.

Boutet I, Ripp R, Lecompte O, Dossat C, Corre E, Tanguy A, Lallier FH.

BMC Genomics. 2011 Oct 28;12:530. doi: 10.1186/1471-2164-12-530.

18.

The homeobox gene CHX10/VSX2 regulates RdCVF promoter activity in the inner retina.

Reichman S, Kalathur RK, Lambard S, Aït-Ali N, Yang Y, Lardenois A, Ripp R, Poch O, Zack DJ, Sahel JA, Léveillard T.

Hum Mol Genet. 2010 Jan 15;19(2):250-61. doi: 10.1093/hmg/ddp484. Epub 2009 Oct 20.

19.

RETINOBASE: a web database, data mining and analysis platform for gene expression data on retina.

Kalathur RK, Gagniere N, Berthommier G, Poidevin L, Raffelsberger W, Ripp R, Léveillard T, Poch O.

BMC Genomics. 2008 May 5;9:208. doi: 10.1186/1471-2164-9-208.

20.

Blast sampling for structural and functional analyses.

Friedrich A, Ripp R, Garnier N, Bettler E, Deléage G, Poch O, Moulinier L.

BMC Bioinformatics. 2007 Feb 23;8:62.

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