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Items: 1 to 20 of 52

1.

Characterization of the cecum microbiome from wild and captive rock ptarmigans indigenous to Arctic Norway.

Salgado-Flores A, Tveit AT, Wright AD, Pope PB, Sundset MA.

PLoS One. 2019 Mar 11;14(3):e0213503. doi: 10.1371/journal.pone.0213503. eCollection 2019.

2.

The human gut Firmicute Roseburia intestinalis is a primary degrader of dietary β-mannans.

La Rosa SL, Leth ML, Michalak L, Hansen ME, Pudlo NA, Glowacki R, Pereira G, Workman CT, Arntzen MØ, Pope PB, Martens EC, Hachem MA, Westereng B.

Nat Commun. 2019 Feb 22;10(1):905. doi: 10.1038/s41467-019-08812-y.

3.

Wood-Derived Dietary Fibers Promote Beneficial Human Gut Microbiota.

La Rosa SL, Kachrimanidou V, Buffetto F, Pope PB, Pudlo NA, Martens EC, Rastall RA, Gibson GR, Westereng B.

mSphere. 2019 Jan 23;4(1). pii: e00554-18. doi: 10.1128/mSphere.00554-18.

4.

Proteomic Dissection of the Cellulolytic Machineries Used by Soil-Dwelling Bacteroidetes.

Taillefer M, Arntzen MØ, Henrissat B, Pope PB, Larsbrink J.

mSystems. 2018 Nov 20;3(6). pii: e00240-18. doi: 10.1128/mSystems.00240-18. eCollection 2018 Nov-Dec.

5.

Interspecies cross-feeding orchestrates carbon degradation in the rumen ecosystem.

Solden LM, Naas AE, Roux S, Daly RA, Collins WB, Nicora CD, Purvine SO, Hoyt DW, Schückel J, Jørgensen B, Willats W, Spalinger DE, Firkins JL, Lipton MS, Sullivan MB, Pope PB, Wrighton KC.

Nat Microbiol. 2018 Nov;3(11):1274-1284. doi: 10.1038/s41564-018-0225-4. Epub 2018 Oct 24.

PMID:
30356154
6.

From proteins to polysaccharides: lifestyle and genetic evolution of Coprothermobacter proteolyticus.

Kunath BJ, Delogu F, Naas AE, Arntzen MØ, Eijsink VGH, Henrissat B, Hvidsten TR, Pope PB.

ISME J. 2019 Mar;13(3):603-617. doi: 10.1038/s41396-018-0290-y. Epub 2018 Oct 12.

PMID:
30315317
7.

Functional metagenomics reveals abundant polysaccharide-degrading gene clusters and cellobiose utilization pathways within gut microbiota of a wood-feeding higher termite.

Liu N, Li H, Chevrette MG, Zhang L, Cao L, Zhou H, Zhou X, Zhou Z, Pope PB, Currie CR, Huang Y, Wang Q.

ISME J. 2019 Jan;13(1):104-117. doi: 10.1038/s41396-018-0255-1. Epub 2018 Aug 16.

8.

Host-linked soil viral ecology along a permafrost thaw gradient.

Emerson JB, Roux S, Brum JR, Bolduc B, Woodcroft BJ, Jang HB, Singleton CM, Solden LM, Naas AE, Boyd JA, Hodgkins SB, Wilson RM, Trubl G, Li C, Frolking S, Pope PB, Wrighton KC, Crill PM, Chanton JP, Saleska SR, Tyson GW, Rich VI, Sullivan MB.

Nat Microbiol. 2018 Aug;3(8):870-880. doi: 10.1038/s41564-018-0190-y. Epub 2018 Jul 16.

PMID:
30013236
9.

Discovery and characterization of a thermostable two-domain GH6 endoglucanase from a compost metagenome.

Jensen MS, Fredriksen L, MacKenzie AK, Pope PB, Leiros I, Chylenski P, Williamson AK, Christopeit T, Østby H, Vaaje-Kolstad G, Eijsink VGH.

PLoS One. 2018 May 24;13(5):e0197862. doi: 10.1371/journal.pone.0197862. eCollection 2018.

10.

"Candidatus Paraporphyromonas polyenzymogenes" encodes multi-modular cellulases linked to the type IX secretion system.

Naas AE, Solden LM, Norbeck AD, Brewer H, Hagen LH, Heggenes IM, McHardy AC, Mackie RI, Paša-Tolić L, Arntzen MØ, Eijsink VGH, Koropatkin NM, Hess M, Wrighton KC, Pope PB.

Microbiome. 2018 Mar 1;6(1):44. doi: 10.1186/s40168-018-0421-8.

11.

The Skin-Mucus Microbial Community of Farmed Atlantic Salmon (Salmo salar).

Minniti G, Hagen LH, Porcellato D, Jørgensen SM, Pope PB, Vaaje-Kolstad G.

Front Microbiol. 2017 Oct 20;8:2043. doi: 10.3389/fmicb.2017.02043. eCollection 2017.

12.

Stable Core Gut Microbiota across the Freshwater-to-Saltwater Transition for Farmed Atlantic Salmon.

Rudi K, Angell IL, Pope PB, Vik JO, Sandve SR, Snipen LG.

Appl Environ Microbiol. 2018 Jan 2;84(2). pii: e01974-17. doi: 10.1128/AEM.01974-17. Print 2018 Jan 15.

13.

Outer membrane vesicles from Fibrobacter succinogenes S85 contain an array of carbohydrate-active enzymes with versatile polysaccharide-degrading capacity.

Arntzen MØ, Várnai A, Mackie RI, Eijsink VGH, Pope PB.

Environ Microbiol. 2017 Jul;19(7):2701-2714. doi: 10.1111/1462-2920.13770. Epub 2017 May 29.

PMID:
28447389
14.

Metagenomics and CAZyme Discovery.

Kunath BJ, Bremges A, Weimann A, McHardy AC, Pope PB.

Methods Mol Biol. 2017;1588:255-277. doi: 10.1007/978-1-4939-6899-2_20.

PMID:
28417375
15.

First insight into the faecal microbiota of the high Arctic muskoxen (Ovibos moschatus).

Salgado-Flores A, Bockwoldt M, Hagen LH, Pope PB, Sundset MA.

Microb Genom. 2016 Jul 29;2(7):e000066. doi: 10.1099/mgen.0.000066. eCollection 2016 Jul.

16.

Proteomic data on enzyme secretion and activity in the bacterium Chitinophaga pinensis.

Larsbrink J, Tuveng TR, Pope PB, Bulone V, Eijsink VG, Brumer H, McKee LS.

Data Brief. 2017 Feb 17;11:484-490. doi: 10.1016/j.dib.2017.02.032. eCollection 2017 Apr.

17.

Proteomic insights into mannan degradation and protein secretion by the forest floor bacterium Chitinophaga pinensis.

Larsbrink J, Tuveng TR, Pope PB, Bulone V, Eijsink VG, Brumer H, McKee LS.

J Proteomics. 2017 Mar 6;156:63-74. doi: 10.1016/j.jprot.2017.01.003. Epub 2017 Jan 6.

PMID:
28069559
18.

From Genomes to Phenotypes: Traitar, the Microbial Trait Analyzer.

Weimann A, Mooren K, Frank J, Pope PB, Bremges A, McHardy AC.

mSystems. 2016 Dec 27;1(6). pii: e00101-16. doi: 10.1128/mSystems.00101-16. eCollection 2016 Nov-Dec.

19.

A polysaccharide utilization locus from Flavobacterium johnsoniae enables conversion of recalcitrant chitin.

Larsbrink J, Zhu Y, Kharade SS, Kwiatkowski KJ, Eijsink VG, Koropatkin NM, McBride MJ, Pope PB.

Biotechnol Biofuels. 2016 Nov 28;9:260. eCollection 2016.

20.

Novel Syntrophic Populations Dominate an Ammonia-Tolerant Methanogenic Microbiome.

Frank JA, Arntzen MØ, Sun L, Hagen LH, McHardy AC, Horn SJ, Eijsink VG, Schnürer A, Pope PB.

mSystems. 2016 Sep 13;1(5). pii: e00092-16. eCollection 2016 Sep-Oct.

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