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Items: 17


The demographic history of African Drosophila melanogaster.

Kapopoulou A, Pfeifer SP, Jensen JD, Laurent S.

Genome Biol Evol. 2018 Aug 29. doi: 10.1093/gbe/evy185. [Epub ahead of print]


On the Demographic and Selective Forces Shaping Patterns of Human Cytomegalovirus Variation within Hosts.

Sackman AM, Pfeifer SP, Kowalik TF, Jensen JD.

Pathogens. 2018 Jan 28;7(1). pii: E16. doi: 10.3390/pathogens7010016. Review.


The Evolutionary History of Nebraska Deer Mice: Local Adaptation in the Face of Strong Gene Flow.

Pfeifer SP, Laurent S, Sousa VC, Linnen CR, Foll M, Excoffier L, Hoekstra HE, Jensen JD.

Mol Biol Evol. 2018 Apr 1;35(4):792-806. doi: 10.1093/molbev/msy004.


Direct estimate of the spontaneous germ line mutation rate in African green monkeys.

Pfeifer SP.

Evolution. 2017 Dec;71(12):2858-2870. doi: 10.1111/evo.13383. Epub 2017 Nov 16.


Loci associated with skin pigmentation identified in African populations.

Crawford NG, Kelly DE, Hansen MEB, Beltrame MH, Fan S, Bowman SL, Jewett E, Ranciaro A, Thompson S, Lo Y, Pfeifer SP, Jensen JD, Campbell MC, Beggs W, Hormozdiari F, Mpoloka SW, Mokone GG, Nyambo T, Meskel DW, Belay G, Haut J; NISC Comparative Sequencing Program, Rothschild H, Zon L, Zhou Y, Kovacs MA, Xu M, Zhang T, Bishop K, Sinclair J, Rivas C, Elliot E, Choi J, Li SA, Hicks B, Burgess S, Abnet C, Watkins-Chow DE, Oceana E, Song YS, Eskin E, Brown KM, Marks MS, Loftus SK, Pavan WJ, Yeager M, Chanock S, Tishkoff SA.

Science. 2017 Nov 17;358(6365). pii: eaan8433. doi: 10.1126/science.aan8433. Epub 2017 Oct 12.


The Demographic and Adaptive History of the African Green Monkey.

Pfeifer SP.

Mol Biol Evol. 2017 May 1;34(5):1055-1065. doi: 10.1093/molbev/msx056.


Characterizing human cytomegalovirus reinfection in congenitally infected infants: an evolutionary perspective.

Pokalyuk C, Renzette N, Irwin KK, Pfeifer SP, Gibson L, Britt WJ, Yamamoto AY, Mussi-Pinhata MM, Kowalik TF, Jensen JD.

Mol Ecol. 2017 Apr;26(7):1980-1990. doi: 10.1111/mec.13953. Epub 2017 Feb 8.


On the Analysis of Intrahost and Interhost Viral Populations: Human Cytomegalovirus as a Case Study of Pitfalls and Expectations.

Renzette N, Pfeifer SP, Matuszewski S, Kowalik TF, Jensen JD.

J Virol. 2017 Feb 14;91(5). pii: e01976-16. doi: 10.1128/JVI.01976-16. Print 2017 Mar 1.


The ultimate and proximate mechanisms driving the evolution of long tails in forest deer mice.

Kingsley EP, Kozak KM, Pfeifer SP, Yang DS, Hoekstra HE.

Evolution. 2017 Feb;71(2):261-273. doi: 10.1111/evo.13150. Epub 2016 Dec 27.


The Impact of Linked Selection in Chimpanzees: A Comparative Study.

Pfeifer SP, Jensen JD.

Genome Biol Evol. 2016 Oct 30;8(10):3202-3208.


Inferring the age of a fixed beneficial allele.

Ormond L, Foll M, Ewing GB, Pfeifer SP, Jensen JD.

Mol Ecol. 2016 Jan;25(1):157-69. doi: 10.1111/mec.13478. Epub 2015 Dec 24.


The population genomics of rapid adaptation: disentangling signatures of selection and demography in white sands lizards.

Laurent S, Pfeifer SP, Settles ML, Hunter SS, Hardwick KM, Ormond L, Sousa VC, Jensen JD, Rosenblum EB.

Mol Ecol. 2016 Jan;25(1):306-23. doi: 10.1111/mec.13385. Epub 2015 Oct 30.


Contributions of intrinsic mutation rate and selfish selection to levels of de novo HRAS mutations in the paternal germline.

Giannoulatou E, McVean G, Taylor IB, McGowan SJ, Maher GJ, Iqbal Z, Pfeifer SP, Turner I, Burkitt Wright EM, Shorto J, Itani A, Turner K, Gregory L, Buck D, Rajpert-De Meyts E, Looijenga LH, Kerr B, Wilkie AO, Goriely A.

Proc Natl Acad Sci U S A. 2013 Dec 10;110(50):20152-7. doi: 10.1073/pnas.1311381110. Epub 2013 Nov 20.


Multiple instances of ancient balancing selection shared between humans and chimpanzees.

Leffler EM, Gao Z, Pfeifer S, Ségurel L, Auton A, Venn O, Bowden R, Bontrop R, Wall JD, Sella G, Donnelly P, McVean G, Przeworski M.

Science. 2013 Mar 29;339(6127):1578-82. doi: 10.1126/science.1234070. Epub 2013 Feb 14.


Gender difference and age-related changes in performance at the long-distance duathlon.

Rüst CA, Knechtle B, Knechtle P, Pfeifer S, Rosemann T, Lepers R, Senn O.

J Strength Cond Res. 2013 Feb;27(2):293-301. doi: 10.1519/JSC.0b013e31825420d0.


A fine-scale chimpanzee genetic map from population sequencing.

Auton A, Fledel-Alon A, Pfeifer S, Venn O, Ségurel L, Street T, Leffler EM, Bowden R, Aneas I, Broxholme J, Humburg P, Iqbal Z, Lunter G, Maller J, Hernandez RD, Melton C, Venkat A, Nobrega MA, Bontrop R, Myers S, Donnelly P, Przeworski M, McVean G.

Science. 2012 Apr 13;336(6078):193-8. doi: 10.1126/science.1216872. Epub 2012 Mar 15.


Activating mutations in FGFR3 and HRAS reveal a shared genetic origin for congenital disorders and testicular tumors.

Goriely A, Hansen RM, Taylor IB, Olesen IA, Jacobsen GK, McGowan SJ, Pfeifer SP, McVean GA, Rajpert-De Meyts E, Wilkie AO.

Nat Genet. 2009 Nov;41(11):1247-52. doi: 10.1038/ng.470. Epub 2009 Oct 25.

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