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Items: 1 to 20 of 370

1.

Analysis validation has been neglected in the Age of Reproducibility.

Lotterhos KE, Moore JH, Stapleton AE.

PLoS Biol. 2018 Dec 10;16(12):e3000070. doi: 10.1371/journal.pbio.3000070. [Epub ahead of print]

2.

Druggability of Coronary Artery Disease Risk Loci.

Tragante V, Hemerich D, Alshabeeb M, Brænne I, Lempiäinen H, Patel RS, den Ruijter HM, Barnes MR, Moore JH, Schunkert H, Erdmann J, Asselbergs FW.

Circ Genom Precis Med. 2018 Aug;11(8):e001977. doi: 10.1161/CIRCGEN.117.001977.

PMID:
30354342
3.

To know the objective is not (necessarily) to know the objective function.

Sipper M, Urbanowicz RJ, Moore JH.

BioData Min. 2018 Oct 4;11:21. doi: 10.1186/s13040-018-0182-8. eCollection 2018. No abstract available.

4.
5.

Statistical Inference Relief (STIR) feature selection.

Le TT, Urbanowicz RJ, Moore JH, McKinney BA.

Bioinformatics. 2018 Sep 18. doi: 10.1093/bioinformatics/bty788. [Epub ahead of print]

PMID:
30239600
6.

Relief-based feature selection: Introduction and review.

Urbanowicz RJ, Meeker M, La Cava W, Olson RS, Moore JH.

J Biomed Inform. 2018 Sep;85:189-203. doi: 10.1016/j.jbi.2018.07.014. Epub 2018 Jul 18. Review.

PMID:
30031057
7.

Benchmarking relief-based feature selection methods for bioinformatics data mining.

Urbanowicz RJ, Olson RS, Schmitt P, Meeker M, Moore JH.

J Biomed Inform. 2018 Sep;85:168-188. doi: 10.1016/j.jbi.2018.07.015. Epub 2018 Jul 17.

PMID:
30030120
8.

runibic: a Bioconductor package for parallel row-based biclustering of gene expression data.

Orzechowski P, Panszczyk A, Huang X, Moore JH.

Bioinformatics. 2018 Dec 15;34(24):4302-4304. doi: 10.1093/bioinformatics/bty512.

PMID:
29939213
9.

Leveraging epigenomics and contactomics data to investigate SNP pairs in GWAS.

Manduchi E, Williams SM, Chesi A, Johnson ME, Wells AD, Grant SFA, Moore JH.

Hum Genet. 2018 May;137(5):413-425. doi: 10.1007/s00439-018-1893-0. Epub 2018 May 24.

PMID:
29797095
10.

The premature infant gut microbiome during the first 6 weeks of life differs based on gestational maturity at birth.

Chernikova DA, Madan JC, Housman ML, Zain-Ul-Abideen M, Lundgren SN, Morrison HG, Sogin ML, Williams SM, Moore JH, Karagas MR, Hoen AG.

Pediatr Res. 2018 Jul;84(1):71-79. doi: 10.1038/s41390-018-0022-z. Epub 2018 May 23.

11.

EBIC: an evolutionary-based parallel biclustering algorithm for pattern discovery.

Orzechowski P, Sipper M, Huang X, Moore JH.

Bioinformatics. 2018 Nov 1;34(21):3719-3726. doi: 10.1093/bioinformatics/bty401.

PMID:
29790909
12.

A Probabilistic and Multi-Objective Analysis of Lexicase Selection and [Formula: see text]-Lexicase Selection.

La Cava W, Helmuth T, Spector L, Moore JH.

Evol Comput. 2018 May 10:1-26. doi: 10.1162/evco_a_00224. [Epub ahead of print]

PMID:
29746157
13.

DNAp: A Pipeline for DNA-seq Data Analysis.

Causey JL, Ashby C, Walker K, Wang ZP, Yang M, Guan Y, Moore JH, Huang X.

Sci Rep. 2018 May 1;8(1):6793. doi: 10.1038/s41598-018-25022-6.

14.

Improving machine learning reproducibility in genetic association studies with proportional instance cross validation (PICV).

Piette ER, Moore JH.

BioData Min. 2018 Apr 19;11:6. doi: 10.1186/s13040-018-0167-7. eCollection 2018.

15.

Collective feature selection to identify crucial epistatic variants.

Verma SS, Lucas A, Zhang X, Veturi Y, Dudek S, Li B, Li R, Urbanowicz R, Moore JH, Kim D, Ritchie MD.

BioData Min. 2018 Apr 19;11:5. doi: 10.1186/s13040-018-0168-6. eCollection 2018.

16.

GPU Accelerated Browser for Neuroimaging Genomics.

Zigon B, Li H, Yao X, Fang S, Hasan MA, Yan J, Moore JH, Saykin AJ, Shen L; Alzheimer’s Disease Neuroimaging Initiative.

Neuroinformatics. 2018 Oct;16(3-4):393-402. doi: 10.1007/s12021-018-9376-y.

PMID:
29691798
17.

Eleven quick tips for architecting biomedical informatics workflows with cloud computing.

Cole BS, Moore JH.

PLoS Comput Biol. 2018 Mar 29;14(3):e1005994. doi: 10.1371/journal.pcbi.1005994. eCollection 2018 Mar.

18.

Characterizing and Managing Missing Structured Data in Electronic Health Records: Data Analysis.

Beaulieu-Jones BK, Lavage DR, Snyder JW, Moore JH, Pendergrass SA, Bauer CR.

JMIR Med Inform. 2018 Feb 23;6(1):e11. doi: 10.2196/medinform.8960.

19.

Investigating the parameter space of evolutionary algorithms.

Sipper M, Fu W, Ahuja K, Moore JH.

BioData Min. 2018 Feb 17;11:2. doi: 10.1186/s13040-018-0164-x. eCollection 2018.

20.

Medication class enrichment analysis: a novel algorithm to analyze multiple pharmacologic exposures simultaneously using electronic health record data.

Vajravelu RK, Scott FI, Mamtani R, Li H, Moore JH, Lewis JD.

J Am Med Inform Assoc. 2018 Jul 1;25(7):780-789. doi: 10.1093/jamia/ocx162.

PMID:
29378062

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