Format

Send to

Choose Destination
Bioinformatics. 2012 Dec 1;28(23):3166-8. doi: 10.1093/bioinformatics/bts589. Epub 2012 Oct 7.

miR-EdiTar: a database of predicted A-to-I edited miRNA target sites.

Author information

1
Department of Molecular Virology, Immunology and Medical Genetics, Comprehensive Cancer Center, The Ohio State University, Columbus, OH, USA. alessandro.lagana@osumc.edu

Abstract

MOTIVATION:

A-to-I RNA editing is an important mechanism that consists of the conversion of specific adenosines into inosines in RNA molecules. Its dysregulation has been associated to several human diseases including cancer. Recent work has demonstrated a role for A-to-I editing in microRNA (miRNA)-mediated gene expression regulation. In fact, edited forms of mature miRNAs can target sets of genes that differ from the targets of their unedited forms. The specific deamination of mRNAs can generate novel binding sites in addition to potentially altering existing ones.

RESULTS:

This work presents miR-EdiTar, a database of predicted A-to-I edited miRNA binding sites. The database contains predicted miRNA binding sites that could be affected by A-to-I editing and sites that could become miRNA binding sites as a result of A-to-I editing.

AVAILABILITY:

miR-EdiTar is freely available online at http://microrna.osumc.edu/mireditar.

CONTACT:

alessandro.lagana@osumc.edu or carlo.croce@osumc.edu

SUPPLEMENTARY INFORMATION:

Supplementary data are available at Bioinformatics online.

PMID:
23044546
PMCID:
PMC3509495
DOI:
10.1093/bioinformatics/bts589
[Indexed for MEDLINE]
Free PMC Article

Supplemental Content

Full text links

Icon for Silverchair Information Systems Icon for PubMed Central
Loading ...
Support Center