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Items: 15

1.

The utility of fitness landscapes and big data for predicting evolution.

de Visser JAGM, Elena SF, Fragata I, Matuszewski S.

Heredity (Edinb). 2018 Nov;121(5):401-405. doi: 10.1038/s41437-018-0128-4. Epub 2018 Aug 20. No abstract available.

PMID:
30127530
2.

The fitness landscape of the codon space across environments.

Fragata I, Matuszewski S, Schmitz MA, Bataillon T, Jensen JD, Bank C.

Heredity (Edinb). 2018 Nov;121(5):422-437. doi: 10.1038/s41437-018-0125-7. Epub 2018 Aug 20.

PMID:
30127529
3.

Coalescent Processes with Skewed Offspring Distributions and Nonequilibrium Demography.

Matuszewski S, Hildebrandt ME, Achaz G, Jensen JD.

Genetics. 2018 Jan;208(1):323-338. doi: 10.1534/genetics.117.300499. Epub 2017 Nov 10.

PMID:
29127263
4.

CRISPR-Cas9-mediated saturated mutagenesis screen predicts clinical drug resistance with improved accuracy.

Ma L, Boucher JI, Paulsen J, Matuszewski S, Eide CA, Ou J, Eickelberg G, Press RD, Zhu LJ, Druker BJ, Branford S, Wolfe SA, Jensen JD, Schiffer CA, Green MR, Bolon DN.

Proc Natl Acad Sci U S A. 2017 Oct 31;114(44):11751-11756. doi: 10.1073/pnas.1708268114. Epub 2017 Oct 16.

5.

The Combined Effect of Oseltamivir and Favipiravir on Influenza A Virus Evolution.

Ormond L, Liu P, Matuszewski S, Renzette N, Bank C, Zeldovich K, Bolon DN, Kowalik TF, Finberg RW, Jensen JD, Wang JP.

Genome Biol Evol. 2017 Jul 1;9(7):1913-1924. doi: 10.1093/gbe/evx138.

6.

Two sides of the same coin: A population genetics perspective on lethal mutagenesis and mutational meltdown.

Matuszewski S, Ormond L, Bank C, Jensen JD.

Virus Evol. 2017 Mar 2;3(1):vex004. doi: 10.1093/ve/vex004. eCollection 2017 Jan.

7.

On the Analysis of Intrahost and Interhost Viral Populations: Human Cytomegalovirus as a Case Study of Pitfalls and Expectations.

Renzette N, Pfeifer SP, Matuszewski S, Kowalik TF, Jensen JD.

J Virol. 2017 Feb 14;91(5). pii: e01976-16. doi: 10.1128/JVI.01976-16. Print 2017 Mar 1.

8.

On the (un)predictability of a large intragenic fitness landscape.

Bank C, Matuszewski S, Hietpas RT, Jensen JD.

Proc Natl Acad Sci U S A. 2016 Dec 6;113(49):14085-14090. Epub 2016 Nov 18.

9.

An experimental evaluation of drug-induced mutational meltdown as an antiviral treatment strategy.

Bank C, Renzette N, Liu P, Matuszewski S, Shim H, Foll M, Bolon DN, Zeldovich KB, Kowalik TF, Finberg RW, Wang JP, Jensen JD.

Evolution. 2016 Nov;70(11):2470-2484. doi: 10.1111/evo.13041. Epub 2016 Sep 13.

PMID:
27566611
10.

A Statistical Guide to the Design of Deep Mutational Scanning Experiments.

Matuszewski S, Hildebrandt ME, Ghenu AH, Jensen JD, Bank C.

Genetics. 2016 Sep;204(1):77-87. doi: 10.1534/genetics.116.190462. Epub 2016 Jul 13.

11.

Detecting and Quantifying Changing Selection Intensities from Time-Sampled Polymorphism Data.

Shim H, Laurent S, Matuszewski S, Foll M, Jensen JD.

G3 (Bethesda). 2016 Apr 7;6(4):893-904. doi: 10.1534/g3.115.023200.

12.

Catch Me if You Can: Adaptation from Standing Genetic Variation to a Moving Phenotypic Optimum.

Matuszewski S, Hermisson J, Kopp M.

Genetics. 2015 Aug;200(4):1255-74. doi: 10.1534/genetics.115.178574. Epub 2015 Jun 1.

13.

Fisher's geometric model with a moving optimum.

Matuszewski S, Hermisson J, Kopp M.

Evolution. 2014 Sep;68(9):2571-88. doi: 10.1111/evo.12465. Epub 2014 Jul 10.

14.

Rapid evolution of quantitative traits: theoretical perspectives.

Kopp M, Matuszewski S.

Evol Appl. 2014 Jan;7(1):169-91. doi: 10.1111/eva.12127. Epub 2013 Dec 6.

15.

The role of swine as "mixing vessel" for interspecies transmission of the influenza A subtype H1N1: a simultaneous Bayesian inference of phylogeny and ancestral hosts.

Hass J, Matuszewski S, Cieslik D, Haase M.

Infect Genet Evol. 2011 Mar;11(2):437-41. doi: 10.1016/j.meegid.2010.12.001. Epub 2010 Dec 14.

PMID:
21163369

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