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Items: 9

1.

Beware the Jaccard: the choice of similarity measure is important and non-trivial in genomic colocalisation analysis.

Salvatore S, Dagestad Rand K, Grytten I, Ferkingstad E, Domanska D, Holden L, Gheorghe M, Mathelier A, Glad I, Kjetil Sandve G.

Brief Bioinform. 2019 Oct 17. pii: bbz083. doi: 10.1093/bib/bbz083. [Epub ahead of print]

PMID:
31624847
2.

A map of direct TF-DNA interactions in the human genome.

Gheorghe M, Sandve GK, Khan A, Chèneby J, Ballester B, Mathelier A.

Nucleic Acids Res. 2019 Aug 22;47(14):7715. doi: 10.1093/nar/gkz582. No abstract available.

3.

A map of direct TF-DNA interactions in the human genome.

Gheorghe M, Sandve GK, Khan A, Chèneby J, Ballester B, Mathelier A.

Nucleic Acids Res. 2019 Feb 28;47(4):e21. doi: 10.1093/nar/gky1210. Erratum in: Nucleic Acids Res. 2019 Aug 22;47(14):7715.

4.

MANTA2, update of the Mongo database for the analysis of transcription factor binding site alterations.

Fornes O, Gheorghe M, Richmond PA, Arenillas DJ, Wasserman WW, Mathelier A.

Sci Data. 2018 Jul 24;5:180141. doi: 10.1038/sdata.2018.141.

5.

JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework.

Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Chèneby J, Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A.

Nucleic Acids Res. 2018 Jan 4;46(D1):D1284. doi: 10.1093/nar/gkx1188. No abstract available.

6.

JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework.

Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Chèneby J, Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A.

Nucleic Acids Res. 2018 Jan 4;46(D1):D260-D266. doi: 10.1093/nar/gkx1126. Erratum in: Nucleic Acids Res. 2018 Jan 4;46(D1):D1284.

7.

ReMap 2018: an updated atlas of regulatory regions from an integrative analysis of DNA-binding ChIP-seq experiments.

Chèneby J, Gheorghe M, Artufel M, Mathelier A, Ballester B.

Nucleic Acids Res. 2018 Jan 4;46(D1):D267-D275. doi: 10.1093/nar/gkx1092.

8.

Blood RNA expression profiles undergo major changes during the seventh decade.

Gheorghe M, Schurmann C, Peters MJ, Uitterlinden AG, Hofman A, Biffar R, Homuth G, Völker U, van Meurs JB, Raz V.

Oncotarget. 2016 Nov 1;7(44):71353-71361. doi: 10.18632/oncotarget.12098.

9.

Major aging-associated RNA expressions change at two distinct age-positions.

Gheorghe M, Snoeck M, Emmerich M, Bäck T, Goeman JJ, Raz V.

BMC Genomics. 2014 Feb 14;15:132. doi: 10.1186/1471-2164-15-132.

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