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Items: 1 to 20 of 24

1.

Integrated pan-cancer map of EBV-associated neoplasms reveals functional host-virus interactions.

Chakravorty S, Yan B, Wang C, Wang L, Quaid JT, Lin CF, Briggs SD, Majumder J, Canaria DA, Chauss D, Chopra G, Olson MR, Zhao B, Afzali B, Kazemian M.

Cancer Res. 2019 Sep 3. pii: canres.0615.2019. doi: 10.1158/0008-5472.CAN-19-0615. [Epub ahead of print]

PMID:
31481499
2.

PBRM1 Regulates Stress Response in Epithelial Cells.

Porter EG, Dhiman A, Chowdhury B, Carter BC, Lin H, Stewart JC, Kazemian M, Wendt MK, Dykhuizen EC.

iScience. 2019 May 31;15:196-210. doi: 10.1016/j.isci.2019.04.027. Epub 2019 Apr 26.

3.

IL-21/type I interferon interplay regulates neutrophil-dependent innate immune responses to Staphylococcus aureus.

Spolski R, West EE, Li P, Veenbergen S, Yung S, Kazemian M, Oh J, Yu ZX, Freeman AF, Holland SM, Murphy PM, Leonard WJ.

Elife. 2019 Apr 16;8. pii: e45501. doi: 10.7554/eLife.45501.

4.

CRM Discovery Beyond Model Insects.

Kazemian M, Halfon MS.

Methods Mol Biol. 2019;1858:117-139. doi: 10.1007/978-1-4939-8775-7_10.

5.

Human retinoic acid-regulated CD161+ regulatory T cells support wound repair in intestinal mucosa.

Povoleri GAM, Nova-Lamperti E, Scottà C, Fanelli G, Chen YC, Becker PD, Boardman D, Costantini B, Romano M, Pavlidis P, McGregor R, Pantazi E, Chauss D, Sun HW, Shih HY, Cousins DJ, Cooper N, Powell N, Kemper C, Pirooznia M, Laurence A, Kordasti S, Kazemian M, Lombardi G, Afzali B.

Nat Immunol. 2018 Dec;19(12):1403-1414. doi: 10.1038/s41590-018-0230-z. Epub 2018 Nov 5.

6.

Critical functions for STAT5 tetramers in the maturation and survival of natural killer cells.

Lin JX, Du N, Li P, Kazemian M, Gebregiorgis T, Spolski R, Leonard WJ.

Nat Commun. 2017 Nov 6;8(1):1320. doi: 10.1038/s41467-017-01477-5.

7.

A TSLP-complement axis mediates neutrophil killing of methicillin-resistant Staphylococcus aureus.

West EE, Spolski R, Kazemian M, Yu ZX, Kemper C, Leonard WJ.

Sci Immunol. 2016 Nov 18;1(5). pii: eaaf8471. doi: 10.1126/sciimmunol.aaf8471.

PMID:
28783679
8.

BACH2 immunodeficiency illustrates an association between super-enhancers and haploinsufficiency.

Afzali B, Grönholm J, Vandrovcova J, O'Brien C, Sun HW, Vanderleyden I, Davis FP, Khoder A, Zhang Y, Hegazy AN, Villarino AV, Palmer IW, Kaufman J, Watts NR, Kazemian M, Kamenyeva O, Keith J, Sayed A, Kasperaviciute D, Mueller M, Hughes JD, Fuss IJ, Sadiyah MF, Montgomery-Recht K, McElwee J, Restifo NP, Strober W, Linterman MA, Wingfield PT, Uhlig HH, Roychoudhuri R, Aitman TJ, Kelleher P, Lenardo MJ, O'Shea JJ, Cooper N, Laurence ADJ.

Nat Immunol. 2017 Jul;18(7):813-823. doi: 10.1038/ni.3753. Epub 2017 May 22.

9.

ZSCAN5B and primate-specific paralogs bind RNA polymerase III genes and extra-TFIIIC (ETC) sites to modulate mitotic progression.

Sun Y, Zhang H, Kazemian M, Troy JM, Seward C, Lu X, Stubbs L.

Oncotarget. 2016 Nov 8;7(45):72571-72592. doi: 10.18632/oncotarget.12508.

10.

Comprehensive assembly of novel transcripts from unmapped human RNA-Seq data and their association with cancer.

Kazemian M, Ren M, Lin JX, Liao W, Spolski R, Leonard WJ.

Mol Syst Biol. 2015 Aug 7;11(8):826. doi: 10.15252/msb.156172.

11.

Opposing roles of STAT1 and STAT3 in IL-21 function in CD4+ T cells.

Wan CK, Andraski AB, Spolski R, Li P, Kazemian M, Oh J, Samsel L, Swanson PA 2nd, McGavern DB, Sampaio EP, Freeman AF, Milner JD, Holland SM, Leonard WJ.

Proc Natl Acad Sci U S A. 2015 Jul 28;112(30):9394-9. doi: 10.1073/pnas.1511711112. Epub 2015 Jul 13.

12.

Possible Human Papillomavirus 38 Contamination of Endometrial Cancer RNA Sequencing Samples in The Cancer Genome Atlas Database.

Kazemian M, Ren M, Lin JX, Liao W, Spolski R, Leonard WJ.

J Virol. 2015 Sep;89(17):8967-73. doi: 10.1128/JVI.00822-15. Epub 2015 Jun 17.

13.

Integrating motif, DNA accessibility and gene expression data to build regulatory maps in an organism.

Blatti C, Kazemian M, Wolfe S, Brodsky M, Sinha S.

Nucleic Acids Res. 2015 Apr 30;43(8):3998-4012. doi: 10.1093/nar/gkv195. Epub 2015 Mar 19.

14.

Evidence for deep regulatory similarities in early developmental programs across highly diverged insects.

Kazemian M, Suryamohan K, Chen JY, Zhang Y, Samee MA, Halfon MS, Sinha S.

Genome Biol Evol. 2014 Sep;6(9):2301-20. doi: 10.1093/gbe/evu184.

15.

Simulations of enhancer evolution provide mechanistic insights into gene regulation.

Duque T, Samee MA, Kazemian M, Pham HN, Brodsky MH, Sinha S.

Mol Biol Evol. 2014 Jan;31(1):184-200. doi: 10.1093/molbev/mst170. Epub 2013 Oct 4.

16.

Computational identification of diverse mechanisms underlying transcription factor-DNA occupancy.

Cheng Q, Kazemian M, Pham H, Blatti C, Celniker SE, Wolfe SA, Brodsky MH, Sinha S.

PLoS Genet. 2013;9(8):e1003571. doi: 10.1371/journal.pgen.1003571. Epub 2013 Aug 1.

17.

Widespread evidence of cooperative DNA binding by transcription factors in Drosophila development.

Kazemian M, Pham H, Wolfe SA, Brodsky MH, Sinha S.

Nucleic Acids Res. 2013 Sep;41(17):8237-52. doi: 10.1093/nar/gkt598. Epub 2013 Jul 11.

18.

Global analysis of Drosophila Cys₂-His₂ zinc finger proteins reveals a multitude of novel recognition motifs and binding determinants.

Enuameh MS, Asriyan Y, Richards A, Christensen RG, Hall VL, Kazemian M, Zhu C, Pham H, Cheng Q, Blatti C, Brasefield JA, Basciotta MD, Ou J, McNulty JC, Zhu LJ, Celniker SE, Sinha S, Stormo GD, Brodsky MH, Wolfe SA.

Genome Res. 2013 Jun;23(6):928-40. doi: 10.1101/gr.151472.112. Epub 2013 Mar 7.

19.

Prediction of breeding values for dairy cattle using artificial neural networks and neuro-fuzzy systems.

Shahinfar S, Mehrabani-Yeganeh H, Lucas C, Kalhor A, Kazemian M, Weigel KA.

Comput Math Methods Med. 2012;2012:127130. Epub 2012 Sep 9.

20.

Improved accuracy of supervised CRM discovery with interpolated Markov models and cross-species comparison.

Kazemian M, Zhu Q, Halfon MS, Sinha S.

Nucleic Acids Res. 2011 Dec;39(22):9463-72. doi: 10.1093/nar/gkr621. Epub 2011 Aug 5.

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