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A survey of Fusobacterium nucleatum genes modulated by host cell infection.

Cochrane K, Robinson AV, Holt RA, Allen-Vercoe E.

Microb Genom. 2019 Oct 29. doi: 10.1099/mgen.0.000300. [Epub ahead of print]


Perspectives for Consideration in the Development of Microbial Cell Reference Materials.

Allen-Vercoe E, Carmical JR, Forry SP, Gail MH, Sinha R.

Cancer Epidemiol Biomarkers Prev. 2019 Sep 12. doi: 10.1158/1055-9965.EPI-19-0557. [Epub ahead of print] Review.


Drivers of human gut microbial community assembly: coadaptation, determinism and stochasticity.

Oliphant K, Parreira VR, Cochrane K, Allen-Vercoe E.

ISME J. 2019 Sep 2. doi: 10.1038/s41396-019-0498-5. [Epub ahead of print]


Corrigendum to "Effects of therapeutic hypothermia on the gut microbiota and metabolome of infants suffering hypoxic-ischemic encephalopathy at birth" [Int. J. Biochem. Cell Biol. 93 (December) (2017), 110-118].

Watkins C, Murphy K, Yen S, Carafa I, Dempsey EM, O' Shea CA, Allen-Vercoe E, Ross RP, Stanton C, Ryan CA.

Int J Biochem Cell Biol. 2019 Oct;115:105550. doi: 10.1016/j.biocel.2019.05.019. Epub 2019 Jun 26. No abstract available.


Macronutrient metabolism by the human gut microbiome: major fermentation by-products and their impact on host health.

Oliphant K, Allen-Vercoe E.

Microbiome. 2019 Jun 13;7(1):91. doi: 10.1186/s40168-019-0704-8. Review.


Gut microbial biofilm composition and organisation holds the key to CRC.

Hold GL, Allen-Vercoe E.

Nat Rev Gastroenterol Hepatol. 2019 Jun;16(6):329-330. doi: 10.1038/s41575-019-0148-4. No abstract available.


Association of HLA-dependent islet autoimmunity with systemic antibody responses to intestinal commensal bacteria in children.

Paun A, Yau C, Meshkibaf S, Daigneault MC, Marandi L, Mortin-Toth S, Bar-Or A, Allen-Vercoe E, Poussier P, Danska JS.

Sci Immunol. 2019 Feb 1;4(32). pii: eaau8125. doi: 10.1126/sciimmunol.aau8125.


Effects of defined gut microbial ecosystem components on virulence determinants of Clostridioides difficile.

Carlucci C, Jones CS, Oliphant K, Yen S, Daigneault M, Carriero C, Robinson A, Petrof EO, Weese JS, Allen-Vercoe E.

Sci Rep. 2019 Jan 29;9(1):885. doi: 10.1038/s41598-018-37547-x.


Metagenomics-Based, Strain-Level Analysis of Escherichia coli From a Time-Series of Microbiome Samples From a Crohn's Disease Patient.

Fang X, Monk JM, Nurk S, Akseshina M, Zhu Q, Gemmell C, Gianetto-Hill C, Leung N, Szubin R, Sanders J, Beck PL, Li W, Sandborn WJ, Gray-Owen SD, Knight R, Allen-Vercoe E, Palsson BO, Smarr L.

Front Microbiol. 2018 Oct 30;9:2559. doi: 10.3389/fmicb.2018.02559. eCollection 2018.


Phylogenetic Clustering of Genes Reveals Shared Evolutionary Trajectories and Putative Gene Functions.

Liu C, Wright B, Allen-Vercoe E, Gu H, Beiko R.

Genome Biol Evol. 2018 Sep 1;10(9):2255-2265. doi: 10.1093/gbe/evy178.


Considerations for best practices in studies of fiber or other dietary components and the intestinal microbiome.

Klurfeld DM, Davis CD, Karp RW, Allen-Vercoe E, Chang EB, Chassaing B, Fahey GC Jr, Hamaker BR, Holscher HD, Lampe JW, Marette A, Martens E, O'Keefe SJ, Rose DJ, Saarela M, Schneeman BO, Slavin JL, Sonnenburg JL, Swanson KS, Wu GD, Lynch CJ.

Am J Physiol Endocrinol Metab. 2018 Dec 1;315(6):E1087-E1097. doi: 10.1152/ajpendo.00058.2018. Epub 2018 Aug 21.


Using bioreactors to study the effects of drugs on the human microbiota.

Guzman-Rodriguez M, McDonald JAK, Hyde R, Allen-Vercoe E, Claud EC, Sheth PM, Petrof EO.

Methods. 2018 Oct 1;149:31-41. doi: 10.1016/j.ymeth.2018.08.003. Epub 2018 Aug 11. Review.


Moderate Renal Impairment and Toxic Metabolites Produced by the Intestinal Microbiome: Dietary Implications.

Pignanelli M, Bogiatzi C, Gloor G, Allen-Vercoe E, Reid G, Urquhart BL, Ruetz KN, Velenosi TJ, Spence JD.

J Ren Nutr. 2019 Jan;29(1):55-64. doi: 10.1053/j.jrn.2018.05.007. Epub 2018 Aug 9.


Guelph Family Health Study: pilot study of a home-based obesity prevention intervention.

Haines J, Douglas S, Mirotta JA, O'Kane C, Breau R, Walton K, Krystia O, Chamoun E, Annis A, Darlington GA, Buchholz AC, Duncan AM, Vallis LA, Spriet LL, Mutch DM, Brauer P, Allen-Vercoe E, Taveras EM, Ma DWL; Guelph Family Health Study.

Can J Public Health. 2018 Aug;109(4):549-560. doi: 10.17269/s41997-018-0072-3. Epub 2018 Apr 25.


Mediterranean Diet Score: Associations with Metabolic Products of the Intestinal Microbiome, Carotid Plaque Burden, and Renal Function.

Pignanelli M, Just C, Bogiatzi C, Dinculescu V, Gloor GB, Allen-Vercoe E, Reid G, Urquhart BL, Ruetz KN, Velenosi TJ, Spence JD.

Nutrients. 2018 Jun 16;10(6). pii: E779. doi: 10.3390/nu10060779.


Data on the gut and saliva microbiota from a cohort of atherosclerosis patients determined by 16S rRNA gene sequencing.

Gloor GB, Wong RG, Allen-Vercoe E, Dinculescu V, Pignanelli M, Bogiatzi C, Reid G, Spence JD.

Data Brief. 2018 May 11;19:481-485. doi: 10.1016/j.dib.2018.05.032. eCollection 2018 Aug.


Metabolic products of the intestinal microbiome and extremes of atherosclerosis.

Bogiatzi C, Gloor G, Allen-Vercoe E, Reid G, Wong RG, Urquhart BL, Dinculescu V, Ruetz KN, Velenosi TJ, Pignanelli M, Spence JD.

Atherosclerosis. 2018 Jun;273:91-97. doi: 10.1016/j.atherosclerosis.2018.04.015. Epub 2018 Apr 17.


The Human Gut Microbial Metabolome Modulates Fungal Growth via the TOR Signaling Pathway.

García C, Tebbji F, Daigneault M, Liu NN, Köhler JR, Allen-Vercoe E, Sellam A.

mSphere. 2017 Dec 13;2(6). pii: e00555-17. doi: 10.1128/mSphere.00555-17. eCollection 2017 Nov-Dec.


Protease-Mediated Suppression of DRG Neuron Excitability by Commensal Bacteria.

Sessenwein JL, Baker CC, Pradhananga S, Maitland ME, Petrof EO, Allen-Vercoe E, Noordhof C, Reed DE, Vanner SJ, Lomax AE.

J Neurosci. 2017 Nov 29;37(48):11758-11768. doi: 10.1523/JNEUROSCI.1672-17.2017. Epub 2017 Oct 31.


A chemical and biological toolbox for Type Vd secretion: Characterization of the phospholipase A1 autotransporter FplA from Fusobacterium nucleatum.

Casasanta MA, Yoo CC, Smith HB, Duncan AJ, Cochrane K, Varano AC, Allen-Vercoe E, Slade DJ.

J Biol Chem. 2017 Dec 8;292(49):20240-20254. doi: 10.1074/jbc.M117.819144. Epub 2017 Oct 11.

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