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Items: 1 to 20 of 24

1.

Revealing lncRNA Structures and Interactions by Sequencing-Based Approaches.

Qian X, Zhao J, Yeung PY, Zhang QC, Kwok CK.

Trends Biochem Sci. 2018 Nov 17. pii: S0968-0004(18)30197-X. doi: 10.1016/j.tibs.2018.09.012. [Epub ahead of print] Review.

PMID:
30459069
2.

Structural analysis reveals the formation and role of RNA G-quadruplex structures in human mature microRNAs.

Chan KL, Peng B, Umar MI, Chan CY, Sahakyan AB, Le MTN, Kwok CK.

Chem Commun (Camb). 2018 Sep 25;54(77):10878-10881. doi: 10.1039/c8cc04635b.

PMID:
30204160
3.

COMRADES determines in vivo RNA structures and interactions.

Ziv O, Gabryelska MM, Lun ATL, Gebert LFR, Sheu-Gruttadauria J, Meredith LW, Liu ZY, Kwok CK, Qin CF, MacRae IJ, Goodfellow I, Marioni JC, Kudla G, Miska EA.

Nat Methods. 2018 Oct;15(10):785-788. doi: 10.1038/s41592-018-0121-0. Epub 2018 Sep 10.

PMID:
30202058
4.

Detecting RNA G-Quadruplexes (rG4s) in the Transcriptome.

Kwok CK, Marsico G, Balasubramanian S.

Cold Spring Harb Perspect Biol. 2018 Jul 2;10(7). pii: a032284. doi: 10.1101/cshperspect.a032284. Review.

PMID:
29967010
5.

Emergence of vascular plants.

Ding Y, Kwok CK.

Nat Plants. 2018 Jun;4(6):325-326. doi: 10.1038/s41477-018-0159-0. No abstract available.

PMID:
29808025
6.

G-Quadruplexes: Prediction, Characterization, and Biological Application.

Kwok CK, Merrick CJ.

Trends Biotechnol. 2017 Oct;35(10):997-1013. doi: 10.1016/j.tibtech.2017.06.012. Epub 2017 Jul 26. Review.

PMID:
28755976
7.

Dawn of the in vivo RNA structurome and interactome.

Kwok CK.

Biochem Soc Trans. 2016 Oct 15;44(5):1395-1410. Review.

PMID:
27911722
8.

FoldAtlas: a repository for genome-wide RNA structure probing data.

Norris M, Kwok CK, Cheema J, Hartley M, Morris RJ, Aviran S, Ding Y.

Bioinformatics. 2017 Jan 15;33(2):306-308. doi: 10.1093/bioinformatics/btw611. Epub 2016 Sep 22.

9.

rG4-seq reveals widespread formation of G-quadruplex structures in the human transcriptome.

Kwok CK, Marsico G, Sahakyan AB, Chambers VS, Balasubramanian S.

Nat Methods. 2016 Oct;13(10):841-4. doi: 10.1038/nmeth.3965. Epub 2016 Aug 29.

PMID:
27571552
10.

Structural Analysis using SHALiPE to Reveal RNA G-Quadruplex Formation in Human Precursor MicroRNA.

Kwok CK, Sahakyan AB, Balasubramanian S.

Angew Chem Int Ed Engl. 2016 Jul 25;55(31):8958-61. doi: 10.1002/anie.201603562. Epub 2016 Jun 29.

PMID:
27355429
11.

Steady-State and Time-Resolved Studies into the Origin of the Intrinsic Fluorescence of G-Quadruplexes.

Sherlock ME, Rumble CA, Kwok CK, Breffke J, Maroncelli M, Bevilacqua PC.

J Phys Chem B. 2016 Jun 16;120(23):5146-58. doi: 10.1021/acs.jpcb.6b03790. Epub 2016 Jun 6.

PMID:
27267433
12.

Amyloid Precursor Protein Translation Is Regulated by a 3'UTR Guanine Quadruplex.

Crenshaw E, Leung BP, Kwok CK, Sharoni M, Olson K, Sebastian NP, Ansaloni S, Schweitzer-Stenner R, Akins MR, Bevilacqua PC, Saunders AJ.

PLoS One. 2015 Nov 30;10(11):e0143160. doi: 10.1371/journal.pone.0143160. eCollection 2015.

13.

Genome-wide profiling of in vivo RNA structure at single-nucleotide resolution using structure-seq.

Ding Y, Kwok CK, Tang Y, Bevilacqua PC, Assmann SM.

Nat Protoc. 2015 Jul;10(7):1050-66. doi: 10.1038/nprot.2015.064. Epub 2015 Jun 18.

PMID:
26086407
14.

Targeted Detection of G-Quadruplexes in Cellular RNAs.

Kwok CK, Balasubramanian S.

Angew Chem Int Ed Engl. 2015 Jun 1;54(23):6751-4. doi: 10.1002/anie.201500891. Epub 2015 Apr 23.

15.

StructureFold: genome-wide RNA secondary structure mapping and reconstruction in vivo.

Tang Y, Bouvier E, Kwok CK, Ding Y, Nekrutenko A, Bevilacqua PC, Assmann SM.

Bioinformatics. 2015 Aug 15;31(16):2668-75. doi: 10.1093/bioinformatics/btv213. Epub 2015 Apr 16.

16.

The RNA structurome: transcriptome-wide structure probing with next-generation sequencing.

Kwok CK, Tang Y, Assmann SM, Bevilacqua PC.

Trends Biochem Sci. 2015 Apr;40(4):221-32. doi: 10.1016/j.tibs.2015.02.005. Epub 2015 Mar 18. Review.

PMID:
25797096
17.

A stable RNA G-quadruplex within the 5'-UTR of Arabidopsis thaliana ATR mRNA inhibits translation.

Kwok CK, Ding Y, Shahid S, Assmann SM, Bevilacqua PC.

Biochem J. 2015 Apr 1;467(1):91-102. doi: 10.1042/BJ20141063.

PMID:
25793418
18.

Determination of in vivo RNA structure in low-abundance transcripts.

Kwok CK, Ding Y, Tang Y, Assmann SM, Bevilacqua PC.

Nat Commun. 2013;4:2971. doi: 10.1038/ncomms3971.

PMID:
24336128
19.

In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features.

Ding Y, Tang Y, Kwok CK, Zhang Y, Bevilacqua PC, Assmann SM.

Nature. 2014 Jan 30;505(7485):696-700. doi: 10.1038/nature12756. Epub 2013 Nov 24.

PMID:
24270811
20.

NMR proton chemical shift prediction of T·T mismatches in B-DNA duplexes.

Kwok CK, Lam SL.

J Magn Reson. 2013 Sep;234:184-9. doi: 10.1016/j.jmr.2013.06.022. Epub 2013 Jul 10.

PMID:
23892104

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