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Items: 1 to 20 of 67

1.

Genetically encodable bioluminescent system from fungi.

Kotlobay AA, Sarkisyan KS, Mokrushina YA, Marcet-Houben M, Serebrovskaya EO, Markina NM, Gonzalez Somermeyer L, Gorokhovatsky AY, Vvedensky A, Purtov KV, Petushkov VN, Rodionova NS, Chepurnyh TV, Fakhranurova LI, Guglya EB, Ziganshin R, Tsarkova AS, Kaskova ZM, Shender V, Abakumov M, Abakumova TO, Povolotskaya IS, Eroshkin FM, Zaraisky AG, Mishin AS, Dolgov SV, Mitiouchkina TY, Kopantzev EP, Waldenmaier HE, Oliveira AG, Oba Y, Barsova E, Bogdanova EA, Gabaldón T, Stevani CV, Lukyanov S, Smirnov IV, Gitelson JI, Kondrashov FA, Yampolsky IV.

Proc Natl Acad Sci U S A. 2018 Dec 11;115(50):12728-12732. doi: 10.1073/pnas.1803615115. Epub 2018 Nov 26.

2.

Negative selection in tumor genome evolution acts on essential cellular functions and the immunopeptidome.

Zapata L, Pich O, Serrano L, Kondrashov FA, Ossowski S, Schaefer MH.

Genome Biol. 2018 May 31;19(1):67. doi: 10.1186/s13059-018-1434-0.

3.

Self-consistency test reveals systematic bias in programs for prediction change of stability upon mutation.

Usmanova DR, Bogatyreva NS, Ariño Bernad J, Eremina AA, Gorshkova AA, Kanevskiy GM, Lonishin LR, Meister AV, Yakupova AG, Kondrashov FA, Ivankov DN.

Bioinformatics. 2018 Nov 1;34(21):3653-3658. doi: 10.1093/bioinformatics/bty340.

4.

The nucleoid protein Dps binds genomic DNA of Escherichia coli in a non-random manner.

Antipov SS, Tutukina MN, Preobrazhenskaya EV, Kondrashov FA, Patrushev MV, Toshchakov SV, Dominova I, Shvyreva US, Vrublevskaya VV, Morenkov OS, Sukharicheva NA, Panyukov VV, Ozoline ON.

PLoS One. 2017 Aug 11;12(8):e0182800. doi: 10.1371/journal.pone.0182800. eCollection 2017.

5.

Saturation of recognition elements blocks evolution of new tRNA identities.

Saint-Léger A, Bello C, Dans PD, Torres AG, Novoa EM, Camacho N, Orozco M, Kondrashov FA, Ribas de Pouplana L.

Sci Adv. 2016 Apr 29;2(4):e1501860. doi: 10.1126/sciadv.1501860. eCollection 2016 Apr.

6.

Local fitness landscape of the green fluorescent protein.

Sarkisyan KS, Bolotin DA, Meer MV, Usmanova DR, Mishin AS, Sharonov GV, Ivankov DN, Bozhanova NG, Baranov MS, Soylemez O, Bogatyreva NS, Vlasov PK, Egorov ES, Logacheva MD, Kondrashov AS, Chudakov DM, Putintseva EV, Mamedov IZ, Tawfik DS, Lukyanov KA, Kondrashov FA.

Nature. 2016 May 19;533(7603):397-401. doi: 10.1038/nature17995. Epub 2016 May 11.

7.

Massively parallel enzyme kinetics reveals the substrate recognition landscape of the metalloprotease ADAMTS13.

Kretz CA, Dai M, Soylemez O, Yee A, Desch KC, Siemieniak D, Tomberg K, Kondrashov FA, Meng F, Ginsburg D.

Proc Natl Acad Sci U S A. 2015 Jul 28;112(30):9328-33. doi: 10.1073/pnas.1511328112. Epub 2015 Jul 13.

8.

Dynasty Foundation: Russian science loses to politics.

Kondrashov FA, Kondrashov AS, Gelfand MS.

Nature. 2015 Jun 25;522(7557):419. doi: 10.1038/522419a. No abstract available.

PMID:
26108844
9.

Recent Origin of the Methacrylate Redox System in Geobacter sulfurreducens AM-1 through Horizontal Gene Transfer.

Arkhipova OV, Meer MV, Mikoulinskaia GV, Zakharova MV, Galushko AS, Akimenko VK, Kondrashov FA.

PLoS One. 2015 May 11;10(5):e0125888. doi: 10.1371/journal.pone.0125888. eCollection 2015.

10.

Corrigendum: Duplication of a promiscuous transcription factor drives the emergence of a new regulatory network.

Pougach K, Voet A, Kondrashov FA, Voordeckers K, Christiaens JF, Baying B, Benes V, Sakai R, Aerts J, Zhu B, Van Dijck P, Verstrepen KJ.

Nat Commun. 2015 Feb 26;6:6543. doi: 10.1038/ncomms7543. No abstract available.

11.

Topological features of rugged fitness landscapes in sequence space.

Kondrashov DA, Kondrashov FA.

Trends Genet. 2015 Jan;31(1):24-33. doi: 10.1016/j.tig.2014.09.009. Epub 2014 Oct 15. Review.

PMID:
25438718
12.

A model of substitution trajectories in sequence space and long-term protein evolution.

Usmanova DR, Ferretti L, Povolotskaya IS, Vlasov PK, Kondrashov FA.

Mol Biol Evol. 2015 Feb;32(2):542-54. doi: 10.1093/molbev/msu318. Epub 2014 Nov 17.

13.

Duplication of a promiscuous transcription factor drives the emergence of a new regulatory network.

Pougach K, Voet A, Kondrashov FA, Voordeckers K, Christiaens JF, Baying B, Benes V, Sakai R, Aerts J, Zhu B, Van Dijck P, Verstrepen KJ.

Nat Commun. 2014 Sep 10;5:4868. doi: 10.1038/ncomms5868. Erratum in: Nat Commun. 2015;6:6543.

14.

Crossing-over in a hypervariable species preferentially occurs in regions of high local similarity.

Seplyarskiy VB, Logacheva MD, Penin AA, Baranova MA, Leushkin EV, Demidenko NV, Klepikova AV, Kondrashov FA, Kondrashov AS, James TY.

Mol Biol Evol. 2014 Nov;31(11):3016-25. doi: 10.1093/molbev/msu242. Epub 2014 Aug 18.

15.

Long-term asymmetrical acceleration of protein evolution after gene duplication.

Pich I Roselló O, Kondrashov FA.

Genome Biol Evol. 2014 Jul 28;6(8):1949-55. doi: 10.1093/gbe/evu159.

16.

A structural perspective of compensatory evolution.

Ivankov DN, Finkelstein AV, Kondrashov FA.

Curr Opin Struct Biol. 2014 Jun;26:104-12. doi: 10.1016/j.sbi.2014.05.004. Epub 2014 Jun 28. Review.

17.

The ctenophore genome and the evolutionary origins of neural systems.

Moroz LL, Kocot KM, Citarella MR, Dosung S, Norekian TP, Povolotskaya IS, Grigorenko AP, Dailey C, Berezikov E, Buckley KM, Ptitsyn A, Reshetov D, Mukherjee K, Moroz TP, Bobkova Y, Yu F, Kapitonov VV, Jurka J, Bobkov YV, Swore JJ, Girardo DO, Fodor A, Gusev F, Sanford R, Bruders R, Kittler E, Mills CE, Rast JP, Derelle R, Solovyev VV, Kondrashov FA, Swalla BJ, Sweedler JV, Rogaev EI, Halanych KM, Kohn AB.

Nature. 2014 Jun 5;510(7503):109-14. doi: 10.1038/nature13400. Epub 2014 May 21.

18.

Anti-leprosy drug clofazimine inhibits growth of triple-negative breast cancer cells via inhibition of canonical Wnt signaling.

Koval AV, Vlasov P, Shichkova P, Khunderyakova S, Markov Y, Panchenko J, Volodina A, Kondrashov FA, Katanaev VL.

Biochem Pharmacol. 2014 Feb 15;87(4):571-8. doi: 10.1016/j.bcp.2013.12.007. Epub 2013 Dec 16.

PMID:
24355563
19.

Color differences among feral pigeons (Columba livia) are not attributable to sequence variation in the coding region of the melanocortin-1 receptor gene (MC1R).

Derelle R, Kondrashov FA, Arkhipov VY, Corbel H, Frantz A, Gasparini J, Jacquin L, Jacob G, Thibault S, Baudry E.

BMC Res Notes. 2013 Aug 5;6:310. doi: 10.1186/1756-0500-6-310.

20.

Estimating the rate of irreversibility in protein evolution.

Soylemez O, Kondrashov FA.

Genome Biol Evol. 2012;4(12):1213-22. doi: 10.1093/gbe/evs096.

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