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Items: 12

1.

The neurodegenerative diseases ALS and SMA are linked at the molecular level via the ASC-1 complex.

Chi B, O'Connell JD, Iocolano AD, Coady JA, Yu Y, Gangopadhyay J, Gygi SP, Reed R.

Nucleic Acids Res. 2018 Dec 14;46(22):11939-11951. doi: 10.1093/nar/gky1093.

2.

Interactome analyses revealed that the U1 snRNP machinery overlaps extensively with the RNAP II machinery and contains multiple ALS/SMA-causative proteins.

Chi B, O'Connell JD, Yamazaki T, Gangopadhyay J, Gygi SP, Reed R.

Sci Rep. 2018 Jun 8;8(1):8755. doi: 10.1038/s41598-018-27136-3.

3.

Proteome-Wide Evaluation of Two Common Protein Quantification Methods.

O'Connell JD, Paulo JA, O'Brien JJ, Gygi SP.

J Proteome Res. 2018 May 4;17(5):1934-1942. doi: 10.1021/acs.jproteome.8b00016. Epub 2018 Apr 19.

4.

Compositional Proteomics: Effects of Spatial Constraints on Protein Quantification Utilizing Isobaric Tags.

O'Brien JJ, O'Connell JD, Paulo JA, Thakurta S, Rose CM, Weekes MP, Huttlin EL, Gygi SP.

J Proteome Res. 2018 Jan 5;17(1):590-599. doi: 10.1021/acs.jproteome.7b00699. Epub 2017 Dec 15.

5.

Quantitative mass spectrometry-based multiplexing compares the abundance of 5000 S. cerevisiae proteins across 10 carbon sources.

Paulo JA, O'Connell JD, Everley RA, O'Brien J, Gygi MA, Gygi SP.

J Proteomics. 2016 Oct 4;148:85-93. doi: 10.1016/j.jprot.2016.07.005. Epub 2016 Jul 16.

6.

A Triple Knockout (TKO) Proteomics Standard for Diagnosing Ion Interference in Isobaric Labeling Experiments.

Paulo JA, O'Connell JD, Gygi SP.

J Am Soc Mass Spectrom. 2016 Oct;27(10):1620-5. doi: 10.1007/s13361-016-1434-9. Epub 2016 Jul 11.

7.

Proteome-wide quantitative multiplexed profiling of protein expression: carbon-source dependency in Saccharomyces cerevisiae.

Paulo JA, O'Connell JD, Gaun A, Gygi SP.

Mol Biol Cell. 2015 Nov 5;26(22):4063-74. doi: 10.1091/mbc.E15-07-0499. Epub 2015 Sep 23.

8.

Selection on meiosis genes in diploid and tetraploid Arabidopsis arenosa.

Wright KM, Arnold B, Xue K, Šurinová M, O'Connell J, Bomblies K.

Mol Biol Evol. 2015 Apr;32(4):944-55. doi: 10.1093/molbev/msu398. Epub 2014 Dec 26.

9.

A proteomic survey of widespread protein aggregation in yeast.

O'Connell JD, Tsechansky M, Royal A, Boutz DR, Ellington AD, Marcotte EM.

Mol Biosyst. 2014 Apr;10(4):851-861. doi: 10.1039/c3mb70508k. Epub 2014 Feb 3.

10.

Dynamic reorganization of metabolic enzymes into intracellular bodies.

O'Connell JD, Zhao A, Ellington AD, Marcotte EM.

Annu Rev Cell Dev Biol. 2012;28:89-111. doi: 10.1146/annurev-cellbio-101011-155841. Review.

11.

Molecular characterization and brain distribution of the progesterone receptor in whiptail lizards.

O'Connell LA, Matthews BJ, Patel SB, O'Connell JD, Crews D.

Gen Comp Endocrinol. 2011 Mar 1;171(1):64-74. doi: 10.1016/j.ygcen.2010.12.010. Epub 2010 Dec 23.

12.

Widespread reorganization of metabolic enzymes into reversible assemblies upon nutrient starvation.

Narayanaswamy R, Levy M, Tsechansky M, Stovall GM, O'Connell JD, Mirrielees J, Ellington AD, Marcotte EM.

Proc Natl Acad Sci U S A. 2009 Jun 23;106(25):10147-52. doi: 10.1073/pnas.0812771106. Epub 2009 Jun 5.

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