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Items: 1 to 20 of 86

1.

The demographic history of African Drosophila melanogaster.

Kapopoulou A, Pfeifer SP, Jensen JD, Laurent S.

Genome Biol Evol. 2018 Aug 29. doi: 10.1093/gbe/evy185. [Epub ahead of print]

PMID:
30169784
2.

The fitness landscape of the codon space across environments.

Fragata I, Matuszewski S, Schmitz MA, Bataillon T, Jensen JD, Bank C.

Heredity (Edinb). 2018 Nov;121(5):422-437. doi: 10.1038/s41437-018-0125-7. Epub 2018 Aug 20.

PMID:
30127529
3.

Adaptive introgression underlies polymorphic seasonal camouflage in snowshoe hares.

Jones MR, Mills LS, Alves PC, Callahan CM, Alves JM, Lafferty DJR, Jiggins FM, Jensen JD, Melo-Ferreira J, Good JM.

Science. 2018 Jun 22;360(6395):1355-1358. doi: 10.1126/science.aar5273.

PMID:
29930138
4.

Synonymous Mutations at the Beginning of the Influenza A Virus Hemagglutinin Gene Impact Experimental Fitness.

Canale AS, Venev SV, Whitfield TW, Caffrey DR, Marasco WA, Schiffer CA, Kowalik TF, Jensen JD, Finberg RW, Zeldovich KB, Wang JP, Bolon DNA.

J Mol Biol. 2018 Apr 13;430(8):1098-1115. doi: 10.1016/j.jmb.2018.02.009. Epub 2018 Feb 18.

PMID:
29466705
5.

On the Demographic and Selective Forces Shaping Patterns of Human Cytomegalovirus Variation within Hosts.

Sackman AM, Pfeifer SP, Kowalik TF, Jensen JD.

Pathogens. 2018 Jan 28;7(1). pii: E16. doi: 10.3390/pathogens7010016. Review.

6.

The Evolutionary History of Nebraska Deer Mice: Local Adaptation in the Face of Strong Gene Flow.

Pfeifer SP, Laurent S, Sousa VC, Linnen CR, Foll M, Excoffier L, Hoekstra HE, Jensen JD.

Mol Biol Evol. 2018 Apr 1;35(4):792-806. doi: 10.1093/molbev/msy004.

7.

Structural Determination of the Broadly Reactive Anti-IGHV1-69 Anti-idiotypic Antibody G6 and Its Idiotope.

Avnir Y, Prachanronarong KL, Zhang Z, Hou S, Peterson EC, Sui J, Zayed H, Kurella VB, McGuire AT, Stamatatos L, Hilbert BJ, Bohn MF, Kowalik TF, Jensen JD, Finberg RW, Wang JP, Goodall M, Jefferis R, Zhu Q, Kurt Yilmaz N, Schiffer CA, Marasco WA.

Cell Rep. 2017 Dec 12;21(11):3243-3255. doi: 10.1016/j.celrep.2017.11.056.

8.

Experimental adaptation of human echovirus 11 to ultraviolet radiation leads to resistance to disinfection and ribavirin.

Carratalà A, Shim H, Zhong Q, Bachmann V, Jensen JD, Kohn T.

Virus Evol. 2017 Nov 20;3(2):vex035. doi: 10.1093/ve/vex035. eCollection 2017 Jul.

9.

Coalescent Processes with Skewed Offspring Distributions and Nonequilibrium Demography.

Matuszewski S, Hildebrandt ME, Achaz G, Jensen JD.

Genetics. 2018 Jan;208(1):323-338. doi: 10.1534/genetics.117.300499. Epub 2017 Nov 10.

PMID:
29127263
10.

CRISPR-Cas9-mediated saturated mutagenesis screen predicts clinical drug resistance with improved accuracy.

Ma L, Boucher JI, Paulsen J, Matuszewski S, Eide CA, Ou J, Eickelberg G, Press RD, Zhu LJ, Druker BJ, Branford S, Wolfe SA, Jensen JD, Schiffer CA, Green MR, Bolon DN.

Proc Natl Acad Sci U S A. 2017 Oct 31;114(44):11751-11756. doi: 10.1073/pnas.1708268114. Epub 2017 Oct 16.

11.

Loci associated with skin pigmentation identified in African populations.

Crawford NG, Kelly DE, Hansen MEB, Beltrame MH, Fan S, Bowman SL, Jewett E, Ranciaro A, Thompson S, Lo Y, Pfeifer SP, Jensen JD, Campbell MC, Beggs W, Hormozdiari F, Mpoloka SW, Mokone GG, Nyambo T, Meskel DW, Belay G, Haut J; NISC Comparative Sequencing Program, Rothschild H, Zon L, Zhou Y, Kovacs MA, Xu M, Zhang T, Bishop K, Sinclair J, Rivas C, Elliot E, Choi J, Li SA, Hicks B, Burgess S, Abnet C, Watkins-Chow DE, Oceana E, Song YS, Eskin E, Brown KM, Marks MS, Loftus SK, Pavan WJ, Yeager M, Chanock S, Tishkoff SA.

Science. 2017 Nov 17;358(6365). pii: eaan8433. doi: 10.1126/science.aan8433. Epub 2017 Oct 12.

12.

The Combined Effect of Oseltamivir and Favipiravir on Influenza A Virus Evolution.

Ormond L, Liu P, Matuszewski S, Renzette N, Bank C, Zeldovich K, Bolon DN, Kowalik TF, Finberg RW, Jensen JD, Wang JP.

Genome Biol Evol. 2017 Jul 1;9(7):1913-1924. doi: 10.1093/gbe/evx138.

13.

Resistance of Echovirus 11 to ClO2 Is Associated with Enhanced Host Receptor Use, Altered Entry Routes, and High Fitness.

Zhong Q, Carratalà A, Shim H, Bachmann V, Jensen JD, Kohn T.

Environ Sci Technol. 2017 Sep 19;51(18):10746-10755. doi: 10.1021/acs.est.7b03288. Epub 2017 Sep 8.

14.

Antiviral drug resistance as an adaptive process.

Irwin KK, Renzette N, Kowalik TF, Jensen JD.

Virus Evol. 2016 Jun 10;2(1):vew014. doi: 10.1093/ve/vew014. eCollection 2016 Jan. Review.

15.

Two sides of the same coin: A population genetics perspective on lethal mutagenesis and mutational meltdown.

Matuszewski S, Ormond L, Bank C, Jensen JD.

Virus Evol. 2017 Mar 2;3(1):vex004. doi: 10.1093/ve/vex004. eCollection 2017 Jan.

16.

Characterizing human cytomegalovirus reinfection in congenitally infected infants: an evolutionary perspective.

Pokalyuk C, Renzette N, Irwin KK, Pfeifer SP, Gibson L, Britt WJ, Yamamoto AY, Mussi-Pinhata MM, Kowalik TF, Jensen JD.

Mol Ecol. 2017 Apr;26(7):1980-1990. doi: 10.1111/mec.13953. Epub 2017 Feb 8.

PMID:
27988973
17.

On the Analysis of Intrahost and Interhost Viral Populations: Human Cytomegalovirus as a Case Study of Pitfalls and Expectations.

Renzette N, Pfeifer SP, Matuszewski S, Kowalik TF, Jensen JD.

J Virol. 2017 Feb 14;91(5). pii: e01976-16. doi: 10.1128/JVI.01976-16. Print 2017 Mar 1.

18.

Molecular Basis for Differential Patterns of Drug Resistance in Influenza N1 and N2 Neuraminidase.

Prachanronarong KL, Özen A, Thayer KM, Yilmaz LS, Zeldovich KB, Bolon DN, Kowalik TF, Jensen JD, Finberg RW, Wang JP, Kurt-Yilmaz N, Schiffer CA.

J Chem Theory Comput. 2016 Dec 13;12(12):6098-6108. Epub 2016 Nov 17.

PMID:
27951676
19.

On the (un)predictability of a large intragenic fitness landscape.

Bank C, Matuszewski S, Hietpas RT, Jensen JD.

Proc Natl Acad Sci U S A. 2016 Dec 6;113(49):14085-14090. Epub 2016 Nov 18.

20.

The Impact of Linked Selection in Chimpanzees: A Comparative Study.

Pfeifer SP, Jensen JD.

Genome Biol Evol. 2016 Oct 30;8(10):3202-3208.

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