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Items: 1 to 20 of 78

1.

Considerations for Measurement of Embryonic Organ Growth.

Prakash S, de Boer BA, Hagoort J, Gunst QD, Ruijter JM, van den Hoff MJB.

Anat Rec (Hoboken). 2019 Jan;302(1):49-57. doi: 10.1002/ar.23908. Epub 2018 Oct 5.

PMID:
30289204
2.

Interfering With DNA Decondensation as a Strategy Against Mycobacteria.

Scutigliani EM, Scholl ER, Grootemaat AE, Khanal S, Kochan JA, Krawczyk PM, Reits EA, Garzan A, Ngo HX, Green KD, Garneau-Tsodikova S, Ruijter JM, van Veen HA, van der Wel NN.

Front Microbiol. 2018 Sep 5;9:2034. doi: 10.3389/fmicb.2018.02034. eCollection 2018.

3.

Paradoxical effects of mutant ubiquitin on Aβ plaque formation in an Alzheimer mouse model.

Verheijen BM, Stevens JAA, Gentier RJG, van 't Hekke CD, van den Hove DLA, Hermes DJHP, Steinbusch HWM, Ruijter JM, Grimm MOW, Haupenthal VJ, Annaert W, Hartmann T, van Leeuwen FW.

Neurobiol Aging. 2018 Dec;72:62-71. doi: 10.1016/j.neurobiolaging.2018.08.011. Epub 2018 Aug 18.

4.

Study Design and qPCR Data Analysis Guidelines for Reliable Circulating miRNA Biomarker Experiments: A Review.

de Ronde MWJ, Ruijter JM, Moerland PD, Creemers EE, Pinto-Sietsma SJ.

Clin Chem. 2018 Sep;64(9):1308-1318. doi: 10.1373/clinchem.2017.285288. Epub 2018 Jun 14. Review.

PMID:
29903876
5.

Amplification of nonspecific products in quantitative polymerase chain reactions (qPCR).

Ruiz-Villalba A, van Pelt-Verkuil E, Gunst QD, Ruijter JM, van den Hoff MJ.

Biomol Detect Quantif. 2017 Nov 1;14:7-18. doi: 10.1016/j.bdq.2017.10.001. eCollection 2017 Dec.

6.

Maternal diabetes causes developmental delay and death in early-somite mouse embryos.

Zhao J, Hakvoort TBM, Ruijter JM, Jongejan A, Koster J, Swagemakers SMA, Sokolovic A, Lamers WH.

Sci Rep. 2017 Sep 15;7(1):11714. doi: 10.1038/s41598-017-11696-x.

7.

Deletion of Fstl1 (Follistatin-Like 1) From the Endocardial/Endothelial Lineage Causes Mitral Valve Disease.

Prakash S, Borreguero LJJ, Sylva M, Flores Ruiz L, Rezai F, Gunst QD, de la Pompa JL, Ruijter JM, van den Hoff MJB.

Arterioscler Thromb Vasc Biol. 2017 Sep;37(9):e116-e130. doi: 10.1161/ATVBAHA.117.309089. Epub 2017 Jul 13.

PMID:
28705792
8.

The effect of repeated freeze-thaw cycles on human muscle tissue visualized by postmortem computed tomography (PMCT).

Klop AC, Vester MEM, Colman KL, Ruijter JM, Van Rijn RR, Oostra RJ.

Clin Anat. 2017 Sep;30(6):799-804. doi: 10.1002/ca.22917. Epub 2017 Jun 19.

PMID:
28514529
9.

Luminescence of thermally altered human skeletal remains.

Krap T, Nota K, Wilk LS, van de Goot FRW, Ruijter JM, Duijst W, Oostra RJ.

Int J Legal Med. 2017 Jul;131(4):1165-1177. doi: 10.1007/s00414-017-1546-1. Epub 2017 Feb 23.

10.

Practical data handling pipeline improves performance of qPCR-based circulating miRNA measurements.

de Ronde MWJ, Ruijter JM, Lanfear D, Bayes-Genis A, Kok MGM, Creemers EE, Pinto YM, Pinto-Sietsma SJ.

RNA. 2017 May;23(5):811-821. doi: 10.1261/rna.059063.116. Epub 2017 Feb 15.

11.

The geometrical precision of virtual bone models derived from clinical computed tomography data for forensic anthropology.

Colman KL, Dobbe JGG, Stull KE, Ruijter JM, Oostra RJ, van Rijn RR, van der Merwe AE, de Boer HH, Streekstra GJ.

Int J Legal Med. 2017 Jul;131(4):1155-1163. doi: 10.1007/s00414-017-1548-z. Epub 2017 Feb 10.

12.

Reference genes for gene expression studies in the mouse heart.

Ruiz-Villalba A, Mattiotti A, Gunst QD, Cano-Ballesteros S, van den Hoff MJ, Ruijter JM.

Sci Rep. 2017 Feb 2;7(1):24. doi: 10.1038/s41598-017-00043-9.

13.

An interactive three-dimensional digital atlas and quantitative database of human development.

de Bakker BS, de Jong KH, Hagoort J, de Bree K, Besselink CT, de Kanter FE, Veldhuis T, Bais B, Schildmeijer R, Ruijter JM, Oostra RJ, Christoffels VM, Moorman AF.

Science. 2016 Nov 25;354(6315). pii: aag0053.

PMID:
27884980
14.

Pivotal role of glutamine synthetase in ammonia detoxification.

Hakvoort TB, He Y, Kulik W, Vermeulen JL, Duijst S, Ruijter JM, Runge JH, Deutz NE, Koehler SE, Lamers WH.

Hepatology. 2017 Jan;65(1):281-293. doi: 10.1002/hep.28852. Epub 2016 Nov 12.

PMID:
27641632
15.

Removal of between-run variation in a multi-plate qPCR experiment.

Ruijter JM, Ruiz Villalba A, Hellemans J, Untergasser A, van den Hoff MJ.

Biomol Detect Quantif. 2015 Jul 30;5:10-4. doi: 10.1016/j.bdq.2015.07.001. eCollection 2015 Sep.

16.

Identification of a regulatory domain controlling the Nppa-Nppb gene cluster during heart development and stress.

Sergeeva IA, Hooijkaas IB, Ruijter JM, van der Made I, de Groot NE, van de Werken HJ, Creemers EE, Christoffels VM.

Development. 2016 Jun 15;143(12):2135-46. doi: 10.1242/dev.132019. Epub 2016 Apr 5.

17.

EMERGE: a flexible modelling framework to predict genomic regulatory elements from genomic signatures.

van Duijvenboden K, de Boer BA, Capon N, Ruijter JM, Christoffels VM.

Nucleic Acids Res. 2016 Mar 18;44(5):e42. doi: 10.1093/nar/gkv1144. Epub 2015 Nov 3.

18.

RDML-Ninja and RDMLdb for standardized exchange of qPCR data.

Ruijter JM, Lefever S, Anckaert J, Hellemans J, Pfaffl MW, Benes V, Bustin SA, Vandesompele J, Untergasser A; RDML consortium.

BMC Bioinformatics. 2015 Jun 20;16:197. doi: 10.1186/s12859-015-0637-6.

19.

Integrating multi-scale knowledge on cardiac development into a computational model of ventricular trabeculation.

de Boer BA, Le Garrec JF, Christoffels VM, Meilhac SM, Ruijter JM.

Wiley Interdiscip Rev Syst Biol Med. 2014 Nov-Dec;6(6):389-97. doi: 10.1002/wsbm.1285. Epub 2014 Oct 6.

PMID:
25286050
20.

Fluorescent-increase kinetics of different fluorescent reporters used for qPCR depend on monitoring chemistry, targeted sequence, type of DNA input and PCR efficiency.

Ruijter JM, Lorenz P, Tuomi JM, Hecker M, van den Hoff MJ.

Mikrochim Acta. 2014;181(13-14):1689-1696. Epub 2014 Jan 14.

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