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Items: 8

1.

Acinetobacter chinensis, a novel Acinetobacter species, carrying blaNDM-1, recovered from hospital sewage.

Hu Y, Feng Y, Qin J, Zhang X, Zong Z.

J Microbiol. 2019 May;57(5):350-355. doi: 10.1007/s12275-019-8485-0. Epub 2019 Feb 26.

PMID:
30806982
2.

Availability of Nanopore sequences in the genome taxonomy for Vibrionaceae systematics: Rumoiensis clade species as a test case.

Tanaka M, Mino S, Ogura Y, Hayashi T, Sawabe T.

PeerJ. 2018 Jun 18;6:e5018. doi: 10.7717/peerj.5018. eCollection 2018.

3.

Spoligotyping and whole-genome sequencing analysis of lineage 1 strains of Mycobacterium tuberculosis in Da Nang, Vietnam.

Hijikata M, Keicho N, Duc LV, Maeda S, Hang NTL, Matsushita I, Kato S.

PLoS One. 2017 Oct 19;12(10):e0186800. doi: 10.1371/journal.pone.0186800. eCollection 2017.

4.

Laboratory Investigation of Salmonella enterica serovar Poona Outbreak in California: Comparison of Pulsed-Field Gel Electrophoresis (PFGE) and Whole Genome Sequencing (WGS) Results.

Kozyreva VK, Crandall J, Sabol A, Poe A, Zhang P, ConcepciĆ³n-Acevedo J, Schroeder MN, Wagner D, Higa J, Trees E, Chaturvedi V.

PLoS Curr. 2016 Nov 22;8. pii: ecurrents.outbreaks.1bb3e36e74bd5779bc43ac3a8dae52e6. doi: 10.1371/currents.outbreaks.1bb3e36e74bd5779bc43ac3a8dae52e6.

5.

In Silico Whole Genome Sequencer and Analyzer (iWGS): a Computational Pipeline to Guide the Design and Analysis of de novo Genome Sequencing Studies.

Zhou X, Peris D, Kominek J, Kurtzman CP, Hittinger CT, Rokas A.

G3 (Bethesda). 2016 Nov 8;6(11):3655-3662. doi: 10.1534/g3.116.034249.

6.

Whole-Genome Sequencing Analysis of Serially Isolated Multi-Drug and Extensively Drug Resistant Mycobacterium tuberculosis from Thai Patients.

Faksri K, Tan JH, Disratthakit A, Xia E, Prammananan T, Suriyaphol P, Khor CC, Teo YY, Ong RT, Chaiprasert A.

PLoS One. 2016 Aug 12;11(8):e0160992. doi: 10.1371/journal.pone.0160992. eCollection 2016.

7.

From FASTQ to Function: In Silico Methods for Processing Next-Generation Sequencing Data.

Preston MD, Stabler RA.

Methods Mol Biol. 2016;1476:23-33. doi: 10.1007/978-1-4939-6361-4_3.

PMID:
27507331
8.

ComB: SNP calling and mapping analysis for color and nucleotide space platforms.

Souaiaia T, Frazier Z, Chen T.

J Comput Biol. 2011 Jun;18(6):795-807. doi: 10.1089/cmb.2011.0027. Epub 2011 May 12.

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