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Items: 1 to 20 of 78

1.

Genomes of the wild beets Beta patula and Beta vulgaris ssp. maritima.

Del Río ÁR, Minoche AE, Zwickl NF, Friedrich A, Liedtke S, Schmidt T, Himmelbauer H, Dohm JC.

Plant J. 2019 May 18. doi: 10.1111/tpj.14413. [Epub ahead of print]

PMID:
31104348
2.

Genetic and epigenetic variation across genes involved in energy metabolism and mitochondria of Chinese Hamster Ovary cell lines.

Dhiman H, Gerstl MP, Ruckerbauer D, Hanscho M, Himmelbauer H, Clarke C, Barron N, Zanghellini J, Borth N.

Biotechnol J. 2019 Apr 10:e1800681. doi: 10.1002/biot.201800681. [Epub ahead of print]

PMID:
30969017
3.

A General Protein O-Glycosylation Gene Cluster Encodes the Species-Specific Glycan of the Oral Pathogen Tannerella forsythia: O-Glycan Biosynthesis and Immunological Implications.

Tomek MB, Maresch D, Windwarder M, Friedrich V, Janesch B, Fuchs K, Neumann L, Nimeth I, Zwickl NF, Dohm JC, Everest-Dass A, Kolarich D, Himmelbauer H, Altmann F, Schäffer C.

Front Microbiol. 2018 Aug 28;9:2008. doi: 10.3389/fmicb.2018.02008. eCollection 2018.

4.

The Gpr1-regulated Sur7 family protein Sfp2 is required for hyphal growth and cell wall stability in the mycoparasite Trichoderma atroviride.

Atanasova L, Gruber S, Lichius A, Radebner T, Abendstein L, Münsterkötter M, Stralis-Pavese N, Łabaj PP, Kreil DP, Zeilinger S.

Sci Rep. 2018 Aug 13;8(1):12064. doi: 10.1038/s41598-018-30500-y.

5.

Comparative transcriptome analysis of a Trichoplusia ni cell line reveals distinct host responses to intracellular and secreted protein products expressed by recombinant baculoviruses.

Koczka K, Peters P, Ernst W, Himmelbauer H, Nika L, Grabherr R.

J Biotechnol. 2018 Mar 20;270:61-69. doi: 10.1016/j.jbiotec.2018.02.001. Epub 2018 Feb 9.

PMID:
29432775
6.

nextPARS: parallel probing of RNA structures in Illumina.

Saus E, Willis JR, Pryszcz LP, Hafez A, Llorens C, Himmelbauer H, Gabaldón T.

RNA. 2018 Apr;24(4):609-619. doi: 10.1261/rna.063073.117. Epub 2018 Jan 22.

7.

Haplotype selection as an adaptive mechanism in the protozoan pathogen Leishmania donovani.

Prieto Barja P, Pescher P, Bussotti G, Dumetz F, Imamura H, Kedra D, Domagalska M, Chaumeau V, Himmelbauer H, Pages M, Sterkers Y, Dujardin JC, Notredame C, Späth GF.

Nat Ecol Evol. 2017 Dec;1(12):1961-1969. doi: 10.1038/s41559-017-0361-x. Epub 2017 Nov 6.

8.

Root traits of European Vicia faba cultivars-Using machine learning to explore adaptations to agroclimatic conditions.

Zhao J, Sykacek P, Bodner G, Rewald B.

Plant Cell Environ. 2018 Sep;41(9):1984-1996. doi: 10.1111/pce.13062. Epub 2017 Oct 16.

PMID:
28857245
9.

Crop wild relative populations of Beta vulgaris allow direct mapping of agronomically important genes.

Capistrano-Gossmann GG, Ries D, Holtgräwe D, Minoche A, Kraft T, Frerichmann SLM, Rosleff Soerensen T, Dohm JC, González I, Schilhabel M, Varrelmann M, Tschoep H, Uphoff H, Schütze K, Borchardt D, Toerjek O, Mechelke W, Lein JC, Schechert AW, Frese L, Himmelbauer H, Weisshaar B, Kopisch-Obuch FJ.

Nat Commun. 2017 Jun 6;8:15708. doi: 10.1038/ncomms15708.

10.

Transcriptomic changes in CHO cells after adaptation to suspension growth in protein-free medium analysed by a species-specific microarray.

Shridhar S, Klanert G, Auer N, Hernandez-Lopez I, Kańduła MM, Hackl M, Grillari J, Stralis-Pavese N, Kreil DP, Borth N.

J Biotechnol. 2017 Sep 10;257:13-21. doi: 10.1016/j.jbiotec.2017.03.012. Epub 2017 Mar 14.

11.

Dissecting the Effect of Genetic Variation on the Hepatic Expression of Drug Disposition Genes across the Collaborative Cross Mouse Strains.

Nachshon A, Abu-Toamih Atamni HJ, Steuerman Y, Sheikh-Hamed R, Dorman A, Mott R, Dohm JC, Lehrach H, Sultan M, Shamir R, Sauer S, Himmelbauer H, Iraqi FA, Gat-Viks I.

Front Genet. 2016 Oct 5;7:172. eCollection 2016.

12.

Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes.

Vlasova A, Capella-Gutiérrez S, Rendón-Anaya M, Hernández-Oñate M, Minoche AE, Erb I, Câmara F, Prieto-Barja P, Corvelo A, Sanseverino W, Westergaard G, Dohm JC, Pappas GJ Jr, Saburido-Alvarez S, Kedra D, Gonzalez I, Cozzuto L, Gómez-Garrido J, Aguilar-Morón MA, Andreu N, Aguilar OM, Garcia-Mas J, Zehnsdorf M, Vázquez MP, Delgado-Salinas A, Delaye L, Lowy E, Mentaberry A, Vianello-Brondani RP, García JL, Alioto T, Sánchez F, Himmelbauer H, Santalla M, Notredame C, Gabaldón T, Herrera-Estrella A, Guigó R.

Genome Biol. 2016 Feb 25;17:32. doi: 10.1186/s13059-016-0883-6.

13.

Oligoadenylation of 3' decay intermediates promotes cytoplasmic mRNA degradation in Drosophila cells.

Harnisch C, Cuzic-Feltens S, Dohm JC, Götze M, Himmelbauer H, Wahle E.

RNA. 2016 Mar;22(3):428-42. doi: 10.1261/rna.053942.115. Epub 2016 Jan 19.

14.

Diversification, evolution and methylation of short interspersed nuclear element families in sugar beet and related Amaranthaceae species.

Schwichtenberg K, Wenke T, Zakrzewski F, Seibt KM, Minoche A, Dohm JC, Weisshaar B, Himmelbauer H, Schmidt T.

Plant J. 2016 Jan;85(2):229-44. doi: 10.1111/tpj.13103.

15.

The 474-Kilobase-Pair Complete Genome Sequence of CeV-01B, a Virus Infecting Haptolina (Chrysochromulina) ericina (Prymnesiophyceae).

Gallot-Lavallée L, Pagarete A, Legendre M, Santini S, Sandaa RA, Himmelbauer H, Ogata H, Bratbak G, Claverie JM.

Genome Announc. 2015 Dec 3;3(6). pii: e01413-15. doi: 10.1128/genomeA.01413-15.

16.

Molecular signatures of plastic phenotypes in two eusocial insect species with simple societies.

Patalano S, Vlasova A, Wyatt C, Ewels P, Camara F, Ferreira PG, Asher CL, Jurkowski TP, Segonds-Pichon A, Bachman M, González-Navarrete I, Minoche AE, Krueger F, Lowy E, Marcet-Houben M, Rodriguez-Ales JL, Nascimento FS, Balasubramanian S, Gabaldon T, Tarver JE, Andrews S, Himmelbauer H, Hughes WO, Guigó R, Reik W, Sumner S.

Proc Natl Acad Sci U S A. 2015 Nov 10;112(45):13970-5. doi: 10.1073/pnas.1515937112. Epub 2015 Oct 19.

17.

Exploiting single-molecule transcript sequencing for eukaryotic gene prediction.

Minoche AE, Dohm JC, Schneider J, Holtgräwe D, Viehöver P, Montfort M, Sörensen TR, Weisshaar B, Himmelbauer H.

Genome Biol. 2015 Sep 2;16:184. doi: 10.1186/s13059-015-0729-7.

18.

Phylloxera (Daktulosphaira vitifoliae Fitch) alters the carbohydrate metabolism in root galls to allowing the compatible interaction with grapevine (Vitis ssp.) roots.

Griesser M, Lawo NC, Crespo-Martinez S, Schoedl-Hummel K, Wieczorek K, Gorecka M, Liebner F, Zweckmair T, Stralis Pavese N, Kreil D, Forneck A.

Plant Sci. 2015 May;234:38-49. doi: 10.1016/j.plantsci.2015.02.002. Epub 2015 Feb 16.

19.

Reliable in silico identification of sequence polymorphisms and their application for extending the genetic map of sugar beet (Beta vulgaris).

Holtgräwe D, Sörensen TR, Viehöver P, Schneider J, Schulz B, Borchardt D, Kraft T, Himmelbauer H, Weisshaar B.

PLoS One. 2014 Oct 10;9(10):e110113. doi: 10.1371/journal.pone.0110113. eCollection 2014.

20.

Assessing technical performance in differential gene expression experiments with external spike-in RNA control ratio mixtures.

Munro SA, Lund SP, Pine PS, Binder H, Clevert DA, Conesa A, Dopazo J, Fasold M, Hochreiter S, Hong H, Jafari N, Kreil DP, Łabaj PP, Li S, Liao Y, Lin SM, Meehan J, Mason CE, Santoyo-Lopez J, Setterquist RA, Shi L, Shi W, Smyth GK, Stralis-Pavese N, Su Z, Tong W, Wang C, Wang J, Xu J, Ye Z, Yang Y, Yu Y, Salit M.

Nat Commun. 2014 Sep 25;5:5125. doi: 10.1038/ncomms6125.

PMID:
25254650

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