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Items: 1 to 20 of 145

1.

The pan-genome effector-triggered immunity landscape of a host-pathogen interaction.

Laflamme B, Dillon MM, Martel A, Almeida RND, Desveaux D, Guttman DS.

Science. 2020 Feb 14;367(6479):763-768. doi: 10.1126/science.aax4079.

PMID:
32054757
2.

Accumulation of genetic variants associated with immunity in the selective breeding of broilers.

Zou A, Nadeau K, Wang PW, Lee JY, Guttman DS, Sharif S, Korver DR, Brumell JH, Parkinson J.

BMC Genet. 2020 Jan 17;21(1):5. doi: 10.1186/s12863-020-0807-z.

3.

Clostridioides difficile Colonization Is Differentially Associated With Gut Microbiome Profiles by Infant Feeding Modality at 3-4 Months of Age.

Drall KM, Tun HM, Morales-Lizcano NP, Konya TB, Guttman DS, Field CJ, Mandal R, Wishart DS, Becker AB, Azad MB, Lefebvre DL, Mandhane PJ, Moraes TJ, Sears MR, Turvey SE, Subbarao P, Scott JA, Kozyrskyj AL.

Front Immunol. 2019 Dec 11;10:2866. doi: 10.3389/fimmu.2019.02866. eCollection 2019.

4.

A High-Throughput, Seedling Screen for Plant Immunity.

Martel A, Lo T, Desveaux D, Guttman DS.

Mol Plant Microbe Interact. 2020 Mar;33(3):394-401. doi: 10.1094/MPMI-10-19-0295-TA. Epub 2020 Jan 23.

PMID:
31851574
5.

Gut-associated IgA+ immune cells regulate obesity-related insulin resistance.

Luck H, Khan S, Kim JH, Copeland JK, Revelo XS, Tsai S, Chakraborty M, Cheng K, Tao Chan Y, Nøhr MK, Clemente-Casares X, Perry MC, Ghazarian M, Lei H, Lin YH, Coburn B, Okrainec A, Jackson T, Poutanen S, Gaisano H, Allard JP, Guttman DS, Conner ME, Winer S, Winer DA.

Nat Commun. 2019 Aug 13;10(1):3650. doi: 10.1038/s41467-019-11370-y.

6.

Perturbations of the ZED1 pseudokinase activate plant immunity.

Bastedo DP, Khan M, Martel A, Seto D, Kireeva I, Zhang J, Masud W, Millar D, Lee JY, Lee AH, Gong Y, Santos-Severino A, Guttman DS, Desveaux D.

PLoS Pathog. 2019 Jul 3;15(7):e1007900. doi: 10.1371/journal.ppat.1007900. eCollection 2019 Jul.

7.

Diversity and Evolution of Type III Secreted Effectors: A Case Study of Three Families.

Bastedo DP, Lo T, Laflamme B, Desveaux D, Guttman DS.

Curr Top Microbiol Immunol. 2019 Jun 26. doi: 10.1007/82_2019_165. [Epub ahead of print]

PMID:
31240408
8.

Comparison of Co-housing and Littermate Methods for Microbiota Standardization in Mouse Models.

Robertson SJ, Lemire P, Maughan H, Goethel A, Turpin W, Bedrani L, Guttman DS, Croitoru K, Girardin SE, Philpott DJ.

Cell Rep. 2019 May 7;27(6):1910-1919.e2. doi: 10.1016/j.celrep.2019.04.023.

9.

Molecular Evolution of Pseudomonas syringae Type III Secreted Effector Proteins.

Dillon MM, Almeida RND, Laflamme B, Martel A, Weir BS, Desveaux D, Guttman DS.

Front Plant Sci. 2019 Apr 5;10:418. doi: 10.3389/fpls.2019.00418. eCollection 2019.

10.

Mycobiome Sequencing and Analysis Applied to Fungal Community Profiling of the Lower Respiratory Tract During Fungal Pathogenesis.

McTaggart LR, Copeland JK, Surendra A, Wang PW, Husain S, Coburn B, Guttman DS, Kus JV.

Front Microbiol. 2019 Mar 15;10:512. doi: 10.3389/fmicb.2019.00512. eCollection 2019.

11.

Map of physical interactions between extracellular domains of Arabidopsis leucine-rich repeat receptor kinases.

Mott GA, Smakowska-Luzan E, Pasha A, Parys K, Howton TC, Neuhold J, Lehner A, Grünwald K, Stolt-Bergner P, Provart NJ, Mukhtar MS, Desveaux D, Guttman DS, Belkhadir Y.

Sci Data. 2019 Feb 26;6:190025. doi: 10.1038/sdata.2019.25.

12.

Microbiome networks and change-point analysis reveal key community changes associated with cystic fibrosis pulmonary exacerbations.

Layeghifard M, Li H, Wang PW, Donaldson SL, Coburn B, Clark ST, Caballero JD, Zhang Y, Tullis DE, Yau YCW, Waters V, Hwang DM, Guttman DS.

NPJ Biofilms Microbiomes. 2019 Jan 21;5:4. doi: 10.1038/s41522-018-0077-y. eCollection 2019.

13.

Penicillin-binding protein 3 is a common adaptive target among Pseudomonas aeruginosa isolates from adult cystic fibrosis patients treated with β-lactams.

Clark ST, Sinha U, Zhang Y, Wang PW, Donaldson SL, Coburn B, Waters VJ, Yau YCW, Tullis DE, Guttman DS, Hwang DM.

Int J Antimicrob Agents. 2019 May;53(5):620-628. doi: 10.1016/j.ijantimicag.2019.01.009. Epub 2019 Jan 19.

PMID:
30664925
14.

Recombination of ecologically and evolutionarily significant loci maintains genetic cohesion in the Pseudomonas syringae species complex.

Dillon MM, Thakur S, Almeida RND, Wang PW, Weir BS, Guttman DS.

Genome Biol. 2019 Jan 3;20(1):3. doi: 10.1186/s13059-018-1606-y.

15.

Identifying Pseudomonas syringae Type III Secreted Effector Function via a Yeast Genomic Screen.

Lee AH, Bastedo DP, Youn JY, Lo T, Middleton MA, Kireeva I, Lee JY, Sharifpoor S, Baryshnikova A, Zhang J, Wang PW, Peisajovich SG, Constanzo M, Andrews BJ, Boone CM, Desveaux D, Guttman DS.

G3 (Bethesda). 2019 Feb 7;9(2):535-547. doi: 10.1534/g3.118.200877.

16.

Design and application of a novel two-amplicon approach for defining eukaryotic microbiota.

Popovic A, Bourdon C, Wang PW, Guttman DS, Voskuijl W, Grigg ME, Bandsma RHJ, Parkinson J.

Microbiome. 2018 Dec 20;6(1):228. doi: 10.1186/s40168-018-0612-3.

17.

A genome-wide association analysis reveals a potential role for recombination in the evolution of antimicrobial resistance in Burkholderia multivorans.

Diaz Caballero J, Clark ST, Wang PW, Donaldson SL, Coburn B, Tullis DE, Yau YCW, Waters VJ, Hwang DM, Guttman DS.

PLoS Pathog. 2018 Dec 7;14(12):e1007453. doi: 10.1371/journal.ppat.1007453. eCollection 2018 Dec.

18.

Constructing and Analyzing Microbiome Networks in R.

Layeghifard M, Hwang DM, Guttman DS.

Methods Mol Biol. 2018;1849:243-266. doi: 10.1007/978-1-4939-8728-3_16.

PMID:
30298259
19.

Postnatal exposure to household disinfectants, infant gut microbiota and subsequent risk of overweight in children.

Tun MH, Tun HM, Mahoney JJ, Konya TB, Guttman DS, Becker AB, Mandhane PJ, Turvey SE, Subbarao P, Sears MR, Brook JR, Lou W, Takaro TK, Scott JA, Kozyrskyj AL; CHILD Study Investigators.

CMAJ. 2018 Sep 17;190(37):E1097-E1107. doi: 10.1503/cmaj.170809. Erratum in: CMAJ. 2018 Nov 12;190(45):E1341.

20.

Chloroplast sequence variation and the efficacy of peptide nucleic acids for blocking host amplification in plant microbiome studies.

Fitzpatrick CR, Lu-Irving P, Copeland J, Guttman DS, Wang PW, Baltrus DA, Dlugosch KM, Johnson MTJ.

Microbiome. 2018 Aug 18;6(1):144. doi: 10.1186/s40168-018-0534-0.

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