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Items: 1 to 20 of 108

1.

Circular RNAs add diversity to androgen receptor isoform repertoire in castration-resistant prostate cancer.

Cao S, Ma T, Ungerleider N, Roberts C, Kobelski M, Jin L, Concha M, Wang X, Baddoo M, Nguyen HM, Corey E, Fazli L, Ledet E, Zhang R, Silberstein JL, Zhang W, Zhang K, Sartor O, Dong X, Flemington EK, Dong Y.

Oncogene. 2019 Nov;38(45):7060-7072. doi: 10.1038/s41388-019-0947-7. Epub 2019 Aug 13.

2.

Genome-wide Transcript Structure Resolution Reveals Abundant Alternate Isoform Usage from Murine Gammaherpesvirus 68.

O'Grady T, Feswick A, Hoffman BA, Wang Y, Medina EM, Kara M, van Dyk LF, Flemington EK, Tibbetts SA.

Cell Rep. 2019 Jun 25;27(13):3988-4002.e5. doi: 10.1016/j.celrep.2019.05.086.

3.

Detection of Epstein-Barr Virus Infection in Non-Small Cell Lung Cancer.

Kheir F, Zhao M, Strong MJ, Yu Y, Nanbo A, Flemington EK, Morris GF, Reiss K, Li L, Lin Z.

Cancers (Basel). 2019 May 31;11(6). pii: E759. doi: 10.3390/cancers11060759.

4.

Gammaherpesvirus RNAs Come Full Circle.

Ungerleider NA, Tibbetts SA, Renne R, Flemington EK.

mBio. 2019 Apr 2;10(2). pii: e00071-19. doi: 10.1128/mBio.00071-19. Review.

5.

A positive role of c-Myc in regulating androgen receptor and its splice variants in prostate cancer.

Bai S, Cao S, Jin L, Kobelski M, Schouest B, Wang X, Ungerleider N, Baddoo M, Zhang W, Corey E, Vessella RL, Dong X, Zhang K, Yu X, Flemington EK, Dong Y.

Oncogene. 2019 Jun;38(25):4977-4989. doi: 10.1038/s41388-019-0768-8. Epub 2019 Feb 28.

6.

Screen technical noise in single cell RNA sequencing data.

Bai YL, Baddoo M, Flemington EK, Nakhoul HN, Liu YZ.

Genomics. 2020 Jan;112(1):346-355. doi: 10.1016/j.ygeno.2019.02.014. Epub 2019 Feb 22.

PMID:
30802598
7.

Gammaherpesvirus Readthrough Transcription Generates a Long Non-Coding RNA That Is Regulated by Antisense miRNAs and Correlates with Enhanced Lytic Replication In Vivo.

Kara M, O'Grady T, Feldman ER, Feswick A, Wang Y, Flemington EK, Tibbetts SA.

Noncoding RNA. 2019 Jan 10;5(1). pii: E6. doi: 10.3390/ncrna5010006.

8.

Comparative Analysis of Gammaherpesvirus Circular RNA Repertoires: Conserved and Unique Viral Circular RNAs.

Ungerleider NA, Jain V, Wang Y, Maness NJ, Blair RV, Alvarez X, Midkiff C, Kolson D, Bai S, Roberts C, Moss WN, Wang X, Serfecz J, Seddon M, Lehman T, Ma T, Dong Y, Renne R, Tibbetts SA, Flemington EK.

J Virol. 2019 Mar 5;93(6). pii: e01952-18. doi: 10.1128/JVI.01952-18. Print 2019 Mar 15.

9.

Connivance, Complicity, or Collusion? The Role of Noncoding RNAs in Promoting Gammaherpesvirus Tumorigenesis.

Bullard WL, Flemington EK, Renne R, Tibbetts SA.

Trends Cancer. 2018 Nov;4(11):729-740. doi: 10.1016/j.trecan.2018.09.005. Epub 2018 Oct 10. Review.

10.

Epigenetically Silenced Candidate Tumor Suppressor Genes in Prostate Cancer: Identified by Modeling Methylation Stratification and Applied to Progression Prediction.

Zhang W, Flemington EK, Deng HW, Zhang K.

Cancer Epidemiol Biomarkers Prev. 2019 Jan;28(1):198-207. doi: 10.1158/1055-9965.EPI-18-0491. Epub 2018 Sep 27.

11.

The Epstein Barr virus circRNAome.

Ungerleider N, Concha M, Lin Z, Roberts C, Wang X, Cao S, Baddoo M, Moss WN, Yu Y, Seddon M, Lehman T, Tibbetts S, Renne R, Dong Y, Flemington EK.

PLoS Pathog. 2018 Aug 6;14(8):e1007206. doi: 10.1371/journal.ppat.1007206. eCollection 2018 Aug.

12.
13.

Driver gene mutations based clustering of tumors: methods and applications.

Zhang W, Flemington EK, Zhang K.

Bioinformatics. 2018 Jul 1;34(13):i404-i411. doi: 10.1093/bioinformatics/bty232.

14.

Transactivation of human endogenous retrovirus K (HERV-K) by KSHV promotes Kaposi's sarcoma development.

Dai L, Del Valle L, Miley W, Whitby D, Ochoa AC, Flemington EK, Qin Z.

Oncogene. 2018 Aug;37(33):4534-4545. doi: 10.1038/s41388-018-0282-4. Epub 2018 May 10.

15.

In colonic ρ0 (rho0) cells reduced mitochondrial function mediates transcriptomic alterations associated with cancer.

Penrose HM, Heller S, Cable C, Nakhoul H, Ungerleider N, Baddoo M, Pursell ZF, Flemington EK, Crawford SE, Savkovic SD.

Oncoscience. 2017 Dec 27;4(11-12):189-198. doi: 10.18632/oncoscience.386. eCollection 2017 Nov.

16.

Maintenance of AP-2-Dependent Functional Activities of Nef Restricts Pathways of Immune Escape from CD8 T Lymphocyte Responses.

Schouest B, Weiler AM, Janaka SK, Myers TA, Das A, Wilder SC, Furlott J, Baddoo M, Flemington EK, Rakasz EG, Evans DT, Friedrich TC, Maness NJ.

J Virol. 2018 Feb 12;92(5). pii: e01822-17. doi: 10.1128/JVI.01822-17. Print 2018 Mar 1.

17.

Racial disparities in patient survival and tumor mutation burden, and the association between tumor mutation burden and cancer incidence rate.

Zhang W, Edwards A, Flemington EK, Zhang K.

Sci Rep. 2017 Oct 20;7(1):13639. doi: 10.1038/s41598-017-13091-y.

18.

Lipids, lipid metabolism and Kaposi's sarcoma-associated herpesvirus pathogenesis.

Dai L, Lin Z, Jiang W, Flemington EK, Qin Z.

Virol Sin. 2017 Oct;32(5):369-375. doi: 10.1007/s12250-017-4027-2. Epub 2017 Oct 10. Review.

19.

MALT1 Inhibition Is Efficacious in Both Naïve and Ibrutinib-Resistant Chronic Lymphocytic Leukemia.

Saba NS, Wong DH, Tanios G, Iyer JR, Lobelle-Rich P, Dadashian EL, Liu D, Fontan L, Flemington EK, Nichols CM, Underbayev C, Safah H, Melnick A, Wiestner A, Herman SEM.

Cancer Res. 2017 Dec 15;77(24):7038-7048. doi: 10.1158/0008-5472.CAN-17-2485. Epub 2017 Oct 9.

20.

Induction of a novel isoform of the lncRNA HOTAIR in Claudin-low breast cancer cells attached to extracellular matrix.

Li M, Li X, Zhuang Y, Flemington EK, Lin Z, Shan B.

Mol Oncol. 2017 Dec;11(12):1698-1710. doi: 10.1002/1878-0261.12133. Epub 2017 Oct 30.

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